RnoINT0113446 @ rn6
Intron Retention
Gene
ENSRNOG00000028521 | Plekhm1
Description
pleckstrin homology and RUN domain containing M1 [Source:RGD Symbol;Acc:1308010]
Coordinates
chr10:91455301-91455895:-
Coord C1 exon
chr10:91455832-91455895
Coord A exon
chr10:91455459-91455831
Coord C2 exon
chr10:91455301-91455458
Length
373 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGTCTCCACTTGCCCTGCAGATT
3' ss Score
8.91
Exon sequences
Seq C1 exon
GCTAAGCCACAGGAATTACCTCTTGGAGTCTCCTCACAAATTCAGTGTTGCTGACCTCCAGCAG
Seq A exon
GTGAGTATGCCATCCTCCCCACACCTAAATCTTAGACTCATAAGTAGGTCCTAATCCTGAAGAAATCACAGAGAAATAGCAGGAGGGATACCTGTCAACTCAGGCCACCCCTCAGAATGGCTGCCCTCCTCTCCCTCACCTCTTACCTAACCAGAGGCTCCCAAGGGTGAGGCCTTTCCCTCAAGGACAGCAGAGTAGACTCAAGTCCCATCCCTAAGTACCATATCCACTACCCTAAGACCCAAGCTAATACCCGCATCAAACAGCCCGATGCAGGGAGGTCTCCTTATCCGTGTGGAACCAGAGGAGTTCCCAGGTAGGTACTGTGGTGATGCATGGTGCCATCTGAGACTGGTCTCCACTTGCCCTGCAG
Seq C2 exon
ATTGCAGAGGGGGTGTATGAAGGATTCCTCAAAGCCCTGATTGAATTCGCCTCCCAGCATGTCTACCACTGTGACCTGTGCACCCAGCGAGGCTTCATCTGCCAGATCTGCCACCACCAGGACATCATCTTTCCCTTTGAGTTTGACACCACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028521:ENSRNOT00000037147:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(10.2=100)
A:
NA
C2:
PF139011=DUF4206=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCTTGGAGTCTCCTCACA
R:
CTGACTGTGGTGTCAAACTCA
Band lengths:
206-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]