GgaINT1021993 @ galGal4
Intron Retention
Gene
ENSGALG00000000201 | PLEKHM1
Description
pleckstrin homology domain-containing family M member 1 [Source:RefSeq peptide;Acc:NP_001026095]
Coordinates
chr27:1587871-1589178:-
Coord C1 exon
chr27:1589115-1589178
Coord A exon
chr27:1588029-1589114
Coord C2 exon
chr27:1587871-1588028
Length
1086 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCCCATCCGCGCTCTGCAGATC
3' ss Score
8.93
Exon sequences
Seq C1 exon
CCTCGATCACAGGAACTACCTCCTGGAGTGTCCCCACAAGTACAGCGTGGCCGACCTGCAGCAG
Seq A exon
GTGAGCACCCCGTGCCGTGCTGGTGGGTGCCCCCCTGGAGGGGCTGCGTCCAATGGGACCCTTCTCCAGCAGCAGATTTCACAGCGCTCCGCTCCTCTTCGCTTCCTGTCATCACCACAGCTTAGGGGCTAAAATCATGGGGTGGGGTGGGGTGGGGTGGGGTGGGGTGGGATGGGGTGGGTTGGAATGGGGTGGGGTGGGTTGGGAAGGGGGTGGGATGGAGTGGGGTTGAAATGGGATTGGTTGGGATGGGATTGGGGTGGGTTTGCGTTGAGGTGGGATGAGGTTGGGATGGGATGGGTGGAGTTGAGAGGTTGGATTGGAGTGGGATGGGATGGGATGGGATGGGATGGAGTTTGGTTGGAGTGGGATGGGGTGGGTTGAGTGGTATGGGAATGGGATGGGTTGTTGGATGGGGTTGTGTTGGGATTGGTTGGGGTGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGGATGGATGGAGTTGAATGAGGTTGGGTTGGAGTGGGATGGATCAGGATGGAGTGGGTTGAGTGGGGGTGGGTTGGGATTGCATTGGGGTGGAATGGGTTGAGTGGGAATGGGATGAAATGGGATTGGGTTGGGATGGGATTGGGTTGGGATTTTTTTGGGATGGTGTTGAGGTGGGATGGGGTTGGGATGGAATGGATTGGAGTGGGTTGAGGGGTGTGAGGGTGGGGTTAATTGGGATGGTGCTGTGGTTGGATGGGATTGGGATGGGACGGGGATGGGAGGGGACTGGGATGGGTGGGGTAGAGTGGGATTTGGATGGGATCGGGTTGGGGTGGGTGAGACTGGAGTGGATTGGGGTGAGATGGGATGGGTTGGGGGGACCTCGTGCTCCAGGAGCTCCAGGAGAACCATTTCACCCCCGTGTGCCCCAACACTGCTGCACCACACAGAACTGCGCCCCAAATGGCGCTCAGTGCGTTCTGCAGCTGAATATCACTGACCCCAAAGCCGTGAGCCCCACGCGGGCACACGGGGCTGCCGAGGCCGTGGGGGACTCTTTGTCTGCAGAGGATGACCCCATCCGCGCTCTGCAG
Seq C2 exon
ATCTCCGACGGCGCCTTCGAGCCCTTCCTGCTCTCCCTGACCCACTTCGCGTCCCACCACGTCTACAGCTGCGATCTGTGCACGCAGCGCGGCTTCATCTGCCAGATCTGCGGCGGCAGCGACATCATCTTCCCCTTCCAGCTGGACTCCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000201:ENSGALT00000000267:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139011=DUF4206=FE(10.3=100)
A:
NA
C2:
PF139011=DUF4206=FE(25.5=100),PF144461=Prok-RING_1=PU(45.6=49.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGATCACAGGAACTACC
R:
CTGGCCGTGGAGTCCAGC
Band lengths:
222-1308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]