DreINT0116817 @ danRer10
Intron Retention
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24543043-24543524:-
Coord C1 exon
chr5:24543408-24543524
Coord A exon
chr5:24543125-24543407
Coord C2 exon
chr5:24543043-24543124
Length
283 bp
Sequences
Splice sites
5' ss Seq
AATGTAACT
5' ss Score
5.91
3' ss Seq
TGTGTTTTTTTGTCATTCAGGCG
3' ss Score
8.87
Exon sequences
Seq C1 exon
GACGTTGGTTTCCAGCATGGGAAGACCGTGTTTGATGTGTGGTGTCGGAGTGGAGTGCGAGAAACGATAATGAAGGACCAGCATCAAGAGGAATTCCACAAATCCAGGAGCACCAAT
Seq A exon
GTAACTTAGCTCTTTTCAACTTGTTTAATCCTACATATTTTTTATTGCAATTTGAGTACAAATGTAAATGTCATGTTGGTTAAATTAAATCCTATACTTGATCACAATAGTGTCAAGCAGAAATCTGCATTAAAACATTTGACTCAAAGCAATATATTTGTTAATTTAAATAAAAATTCTTCCCCAAAATCCAACAACAGCACTTTCAGAGCGTCCAGAAGTAAGAATACTAATAAATTAAATACTAATAATGATATAAATTCTGTGTTTTTTTGTCATTCAG
Seq C2 exon
GCGACATGTCCAAATGCTTCTTTCACTGATCTGGCAGAAATAGTATCCCGGATAGAGCCAGTTAAGCAGGCCGTTGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002:ENSDART00000145061:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGTTTCCAGCATGGGAA
R:
CATCCACAACGGCCTGCTTAA
Band lengths:
197-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]