GgaINT0125244 @ galGal4
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1689658-1694537:+
Coord C1 exon
chr17:1689658-1689768
Coord A exon
chr17:1689769-1694452
Coord C2 exon
chr17:1694453-1694537
Length
4684 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GCCTTAATGCTGTGTTTCAGAAC
3' ss Score
9.35
Exon sequences
Seq C1 exon
GAAGTGGGATATCAACATGGGAAGACTGTGTTTGGTGTCTGGTCCAGGAGCGGCGTCCTTGACAAGATGCTACGAGACAGACAAGAGACACACAAAACCAAAACTTCTGAT
Seq A exon
GTGAGTGTTCAGTTTAATTGCATTGCCCTGCAAGAGCTACTTGAAGCCACCAGAGACTGGTCAGGGAGATGAGGGAGAACGATTGCCTCAAGTGTGGGTTTTTTGTGTGAGGATGCACGTATTAAAGTATTTTAGGTGGCACACACAAGAGGTGTGATCAGTTTTTCAGAAGTTTCTTTCCTTGAACCGCAGTATGGAGATTGAGGTCCTGCACTTCTTGCATCATCGGCTGCAAGTGTGACCAAAGTGTGTTCCACCTGAGTCCCAGTGGTTTTGACACAGCCAAACAAATCTCTATCCCTGTTACCTCATGCAGACATCCACCCATGTCCTCACCAAGCACAACACTGTCTCTCAGGCCCCAAGAATGGATGTAGCCCTCTGTAAGGCAGCTCTCCTCTTGCTGTTTTGTTCCAGCAGATTACTGATGCTTCCTTTGTTACCCAGAGGTATTCACAACACTGAAATACTGGGGGAAGGTGGGATGCTCACCCCATAACCAGTGCCTTCTGTGACATCCACACACACCAGCTGTGTATGTCCACCTCCTCTTCTCCCTTCTGGGGTGTGGGTCAGCAGCCTGCAGGCACCAAATGCTGCTGGAGGAGCTGCTTCCTGCCCTGAGAGTTGCAGTGGGAGGGGTGACTGTAACCCAGCAGGGGCTGGGGCAGGATGGTCTGTGCATGGCCACAGTGTACCCATCGCATGGATGCACGTCTCAGAGTAATGTTGGCTAACACAACAAGTGACCTCTTAAGAATTACTTTTTTGTTTGTTCTTGTTCAGCAAACTTCAGGCTGTGCCTGGGTATTGTTCTTGCTACTGGAAGCTGCCCTGCTGAGGCAGCGGCTCTCCCACCAGCTGTCCAGTGCTGGTTGCAGAGGATGTGAGTTGGGATTGCTGGTATTGATCTCAGGCGTTGCTCTTGGGTTTGCAATTCCAGCGCTAAATTCAGCCTCTGGAGCTGGTGCAGTAACTGTGGGCTACCTCAATTGCCAGTTTTCAAGAAACTGTTACCAGTTTTTTGAGGACTTTGGAACTATATTATAATATATTGGCTTATTATCCTCACTTTCTTTGAATTCCTCTTATTTAAAACCCAAGTTCTACAAAGGCTTCATGTTTTACCCAGTAATTCTTCTTTATTGTCTTTTAGAGATAGGGAAATTAGCAGTAGTATCTTAAGTGATTGCCAAAATGCATTGTAAGTGTAGTGAGCTTCAGCAAGGAGAGTCAATAGAGGTGAAAAATGACATTAAGAGTTTGCAGCTCTTCCAGAGATCGGTGGCTGAGCACTTCAGCTGGGAGAGAAGTGGTGTGAGCAAGGGGAGAGGAAGGGTAAGCCTCGGAGCAATGGGCATTAGCCTAACAACAAATAGCAGGGCTCAATTTTTCAGACACCCACATCTGGCTTGTTGCCTTTAGATCCCCATTTGTCACCCGAGAGGGACAAATGTTTGTAGGGTGTGTGAGTCATTTGCTGAAATGAAAATGGCTCTGCTGGGATAGTGAGTGACACCCTCAGCTCTGCCCCTGTGAAGGATGCCAAGGGATGGGGGGGGGTGAGTGCTGATGCCTGCTACCATCAGGTTAATCCCACCTAAGCTGATGGGCAGGGTGGTGGCTGAGGGTGAGCAGAGAGGAGCTGAGCTTTGTGAGAAAAGAGCTGATGATCAGAGTAGCCCGAGGAGTAGCAGAGCTTGTTGCCTTTACTGGGAAGATGAGCTGAGCTAGGAGATGTGTTGGCATGAGCTGTGCAGGGGGTGGGGGGGTCTCCGTTCTGCCTCTGAGCCTGTGTTCAGCTGGGCACATGCTGCTGTGTGTGTGAGTAGGCAGAAGGAGTTTTCTGTCAAGGGACAGAAAACAGTGCATGTCCATCAGAAATGGTTGTGTCCTGTTTCATCTTCTTTTATCACCAGCTGGTAACAAGCTTCAACATCTTTGCTGCCATTAACAAATGTACCTTTCCAAGAAGACTTCGTTAAAAATTGCCCATGAGATGGGATGCAATCATTCAGGCTCATATTTCAGTTGAGTTACGGTATTACAGCTGTGCATCGTGCAGGATTTTGAACATTCATCATCATCTCCCCTGTTGTTTTTTATGGCAGTTCCACTGCCAAGTAGGTCATGCAGTGCTTGTAGATAGAGCTTGTCATTGCCTTTCTGTGTGAGCACTTTGTAACGAGGCAGGAAGTGCTGATTGCTGGGGCACCAAAATGGTGCAAATACAGGGGTGTGAGGATGGCTGTCCAATAGGCTGTCAGCCTGCTGTGCTCCCCAGGCCTGGAGCTGAGCTCTGGGCTGTGTTCTGAGCACCTCGAAAGCTCCTGGAGACAAAGAGACGTCGTAATCTGACTTTTGTTTTAATAGATTAATTTCTACAAAATAAGAGGTATTGCAGGCTCCCACCGGGGTGCTTTGCTTTTTTCCTTAGCCCTTTAGAGTCACTTAAGTCCTTTATCTCTGCTGTCTTCCAGGGATAACAGCTGATATTTTTAACTTGCTTTCATTAGCAAAGGTTTTGATCTATGTTTTACTTCTTCAGCTATTTCGGGAGCGTTCAGCATCTTGGAGCGTTGGGCTCGGTTGCTTTTCATCTTGATTCCATGTTGCAAGCATTGAATTTTTACTTAATCTCTGGATATTTAAGCATTTAGATACTTCTGGCTTTCATCATTCGGTTGCTATTTATCTCTCCTTAAAATGCAAATACCGAAGTCGTGAACAACAGCAGCCTTACATAAAGTTCATGTGAACAACCCCAATTCTTCCCAGTGCAGAGCAGTGCAGTGCCACTAATTGGATCTCCTCGGGGAAGTTTTGTCTATTGAAATGTTATTCATAGTCAAAGCTAAATATACTCCAGCAGACTACAATAGTAACCGTCTCTCCACTCTCATTTATTTAATAAAGATTATGCTGAAGAGAATACTTTCTCCCTTCTTGGAGAAAATACTGTCGGGGAAGTTTGAGAGTAGGATTCGAATGAATCTGAGGCACTTCTTTTCCTTGCATTAACCGATGGGAGAGTGATTTTGTCCTTAGAAGTGTCGGGGGAAGTGTTCAAACACTGCACTCCATTTTGCAAAGCATCAGATGGGCAGTCACCTGGTTTCCCACCAGGCAGCTCCAGTCTGAGAGCGAGGCCTTTGGGCTCAGTTTGTTGGTGTGGTGAGTCCATATCTCAGAGTGCAGGTGATTGCCTCCAGCACTGCTGTGTGCTCTGTGGGCACTAAATGAGGATATGGATGCTTTTTCCCTCCCATCCCAGGGAACGGCTGTCTGCAGGCACTTTGCTGGGACCGCTCAGGTCGCATATTCACAGCAGAGCAGGACTGACTCACTCTTCTGCTGGCTCCTTGATGGTCAGACCTTATTCTGAGCCTCTGTACTTCTTTATATTTTACAAAGCATGTCCTAAGCCACTGCTGTTTCATTTCATGCTGCTATTTTTTAATTCTGTTTGGGCCTTTCTCTGTCCACCGCACCCAGCAGCTGTTTGTCCCGGATCCACACTCTGCTATGGCTGTACTAAATCACATCAGAAGTTGCTTATGGATTAGAGGTCAACTGAGAGCAATCTGCTGCAGCTGTAATGGGCTTCTGCTGTGACCCTGCGGGGGCTGTGTGATTCACAGTGCCGATGCTCTTGCCAGAAGAGCAAGGAATTGCTCACAAAAACCCTGTGTGAGGGAGCTGCTCTGGCTAGAAGCACGTGGGCAGACCCTCACAGCGACTCCTGGCAGCTCCATGCCCATCATGAGTCCCCACCAGCTCCTCACCTCTGCTCTCCTCTGGGGCAGGCTGCTGTTGTGCTGATGAAAGAGGTTGGTTTTGAAGATAGGCAAAGACTATTTGGGTTTCCACCTGGTCACCTGTGCCCACCTCAAGGATGCGGGAAGGCCAGGATGGTCCTGAAACGCCTAACCTGGGTCTTATGGGAAGAGAAACTAGAGCAAGCAGCTCTTTGAAATAGAGAATGCTCAACCCACTGCCTGGGTGAGACAGTGAAAATAGAAAGGGTTTATTACAAAGAGGGCTGACAGTGGGCAGCATTCCCCCTTGCAGGTGGATGTCTCACCTCGGGCTCCTGCTCACTGCGGCACCTCCAGCCCCTGCACTGCCCTGAGTATGGGGCTCCCCTGCCAGGTCCTGATCCCCCCCATCCTGAGCTTTGCTTGCACTGCTTCTATAGCTCTGCAGGCTCCTGTGGCACTGTGGATCCTTCTGCCTTCCCACCAGGCTCCTTAGGGAAGGAGAAGTCTGCCTGGGGGCTGCAGCTGGCCCAGCAGGTCCTTCTGACAGAGTAACACGGAGTGGTGGTGGAGAGCAACCAAGTACCAGGAGCACTGTGTGTCGCGGAGCCCAGACCCTCCAGTTCTTGTCTTTGTAGCCTTTTGTATAGTTTCCTACATTTCAGTAAGGTTTCATACTGCATGGATGGAGAAGGGCTGGTTGAACCTCGTCCCAACGCCTGCTTGCCCTTGGGAAGCCTGTCTGCAGCACAGCCCTGCTGCAGGGTCACTGTTCAGTGCATTACTCACCAATGAGTAATGAGGGGGAAATCGTGGCAAACGTACGTCTGGAGCTTTTGTGTGTTCAGTGTCATTTGTACATCGTCTTGAATTGGGTATTCTGTGGACAGCTGGTAACATACCTCAGCCTTAATGCTGTGTTTCAG
Seq C2 exon
AACGTGACCTATCCCAGCACCTCCTTCACAGACCTGGCAGAAATCGTGTCCAGGATCGAGCCAGTGAAAGCTGCCGTGGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000040268:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]