RnoINT0114541 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2260093-2260408:+
Coord C1 exon
chr3:2260093-2260203
Coord A exon
chr3:2260204-2260323
Coord C2 exon
chr3:2260324-2260408
Length
120 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
ACGCACCTGCCTTTCTCCAGGTG
3' ss Score
10
Exon sequences
Seq C1 exon
GAAGTTGGGTATCAACATGGGCGGACAGTATTTGACATCTGGGTCCGGAGCGGGGTCCTAGAGAAGATGTTGCAGGACCAGCAGGGGACAAGCAAGAGGAAGGACTGTGGG
Seq A exon
GTGAGATGGCCAGACGGGCAGGTGGGCGGGGCAGGGCAGGGGTCCTGTGCACCAGCAGCATCCCCTGCAGGTGTGCAGCCCGAGACAGGTGGCATGCCTCACGCACCTGCCTTTCTCCAG
Seq C2 exon
GTGTTCACCTGTCCCAATTCCTCCTTCACGGACCTCGCTGAGATTGTGTCACGGATTGAGCCAGCCAAAGTGGCTGCAGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTATCAACATGGGCGGACAG
R:
CATCCACTGCAGCCACTTTGG
Band lengths:
189-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]