DreINT0117546 @ danRer10
Intron Retention
Gene
ENSDARG00000055113 | pom121
Description
POM121 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-6557]
Coordinates
chr10:35237272-35238478:-
Coord C1 exon
chr10:35238387-35238478
Coord A exon
chr10:35237358-35238386
Coord C2 exon
chr10:35237272-35237357
Length
1029 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
ACTATTGCTAAACTCTGTAGGGA
3' ss Score
4.53
Exon sequences
Seq C1 exon
AGACGAGCAGCATCCAGTCTCAGTCTTTCTCCCTTCACAAGCCCAGGAGGATCTCGGTGTCAGACTCCAGAGCGAGCTGCCAAGAAAGCAAG
Seq A exon
GTATCTGTCTTTAGATTTGTATTATTATTTAAAAAGTTTGGCGTTACGCTAATCATTTTTACAGATTTTGGGAATGTCCTAATATAAGACGATTTTTTAAAGGGATACATAGCATTTTAGAAAGTATCTTAAATACTGCAATTGATTTCAGGTTTGAGGTACTTTATTTGGGTATGCTGTCAATAGATTTCTTAGAAAGATAAAATGTATATATGTATAGTCATCCTTGCTTTAAGTAAAAAAAAAAGCCATTACTAGATGCTGGTGTAAACCTAATCCACCTAGGCTTCGGCCGGTATAAGATTCTGATGGTGTGATAACCTTGGATAAAAATATCATGGTATTGTGAGAACTGCTCTAAAATATATTCTTTTTAAATGTCTGAGTAAAAAACAATACATTTAATTTTTTTTAAAGAAACTAAACAAAAAATAAAATAGTAAAAAATCTTACACATACCTTAGGAACGGTTTTACAGAAAATGTTTGCAATTTTAAAACCTTGTCTTTTCCAAACTGCGATATACCCTGAAAACAGTTATCATCTCATGCCTAAATCCACCACAAATGCAGGATTTAATTGATGTTTTGAAAAATATATTCATTATAGAGAAAATTACATATTGTGTGCAAAGCCAAAACAACTTGTTGACCTGTGGTTTAAATGGATTGAGTACATTAATCCAATTAAACCTAATGTCTTTTTTCTATAGAATCTAAGATTAATTTTACTGATAATATTGTCCCTTCCCTTTTTTTCTGTATATAGTTTTGATAAGAGTTATGTAAAATAAGGCAAAGGGGTATGTTGTTCTGTCACTGTCATGAAGAGATTCGTGTCTCCTCTTTGATCCCGGAATGGCGAATTTGAACTGGAAAAGCTGTAAAAGTGACATGTCTACTGATGCTGTGAATTGTATCTCTCTGCAATAAAAACTTAAATAAAAAAATGTGTTTTTAAAAATTGGCCTTGATATAAAATGTGAACACACAACTACTCTAATTAATAAACTATTGCTAAACTCTGTAG
Seq C2 exon
GGAGGAAGATGCTACCTCACCAAGTTCAACATCCTTCGCTAAAACGGATAAGGTGGCAGCTGATCCTGACCCTTCTCCAAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055113:ENSDART00000127805:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(12.3=100)
A:
NA
C2:
PF152291=POM121=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]