GgaINT1002799 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NE56]
Coordinates
chr19:305526-306512:-
Coord C1 exon
chr19:306421-306512
Coord A exon
chr19:305597-306420
Coord C2 exon
chr19:305526-305596
Length
824 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
GCTTTCTCCCACTGGTGCAGGGA
3' ss Score
7.46
Exon sequences
Seq C1 exon
CTGTGGAAGAGGAGTGGTGTGAGTGTGTCACCGCTGTCCAGCCCTGCATCCTCCCGTCCCCAGACACCAGAGTGGCCTATCAAGAAAGCCAG
Seq A exon
GTAACCAAGCTGCCCACTGTGCCAGCCGGGAGGAGGGCAGGTACCATCCCAGCTGTCTCACCAGGACTGTTTGTGAAACAACTGCTGGTGGCCCACCAGTGTGGTGGTCCCATTGGGTTTGCACTAGTTCAGGTCCCTGCCACCTTGTCACACTGCTGTCCTGGCAGAGTGCTGAAGCAGCAGCACTGTGCCATCCCCATCCCTGCCCTACTCTGGGACTTGGTTAGAGATGGAAGTGTTGAGAGATTGCCACAGAGGCAGTGTTCTGCTGTGGCATCGCTGTGATCTGGGTTCCCTGAGGCACCAGAACTCAGGAGGAGACAGGTCCTGATCACTGTCTCCTCAAAGGTGATTCACAGGAGCTACACAAACTACGTAAAATAAGATTGCATTTTAGGGCTAGCCTTGGGGTGCAAGCCCTTGTGCTCCTCTGTCCTGGCTCAGAGGGCCTGGCTCCAATGGGAAAAGCTTCAGTCAGAACCAAAACTGACACAGCCTTGTGCACTGAAAGGAGAGGAGCTTGTGAGAGGTCGCATTTCCCATCCAGAACTTCTGGTTGCCACCCCAAGGTTGATCTATCCTGCAGAGCACTGGGGGTGTGTAGCACCAAGCTGTGGTCTTGGAGGGATGAGCAGCTCTCTGCCTTCAGCTGCTCTTGGGCCGGTGCAGGAAGCACAGGGCTTTCCCCATGCTATCTCAGGGCTTGTTGGATGGCTGCCTCATGGGCCAGGGCTGCTGGTGGGACTCTGTTGTGTGTTTGGCCTTCTGGGGGATGGGGCCACATCTGAGGCTTGATCCTAAGTGGCTTTCTCCCACTGGTGCAG
Seq C2 exon
GGAGGAGGAGACGCATTGCTCCAACACTTCCACCCCAGTGAAATCAGACAAGGAGCTGCAGACGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021694:ENSGALT00000001368:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(12.4=100)
A:
NA
C2:
PF152291=POM121=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]