RnoINT0115365 @ rn6
Intron Retention
Gene
ENSRNOG00000001449 | Pom121
Description
POM121 transmembrane nucleoporin [Source:RGD Symbol;Acc:620680]
Coordinates
chr12:24332892-24333726:+
Coord C1 exon
chr12:24332892-24332983
Coord A exon
chr12:24332984-24333652
Coord C2 exon
chr12:24333653-24333726
Length
669 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
GCTTTTCACAATCTCCACAGAGA
3' ss Score
8.07
Exon sequences
Seq C1 exon
CTGTGGAAGAGGAGTGGTCCCACCTCTTCTCCCTTCTCCAGCCCAGCTTCCTCCCGCTCCCAGACACCAGAGAGGCCAGCCAAGAAGACAAG
Seq A exon
GTGATCATCATTCCCTCCTGGTCACTTTGTATGGACGGGGCAATGGGCTTAACAGGGATTAGCTGGTGGGCTGCTTTTTCTGACTCAGCAAATCAAAGAGTCAAACCCCAGAAAAGTAGCAAAGAGCCTGCTAGAGTTATGTCCCTGTCCTACAGTGAGAGCAGCTGATGGCTGGAGTTCCTTCTCTGTCTCATACTCCACTGGGAGTGGTGCAGAGTGGACCCGGTCAACAGGGAGCCTGAGTCTCTCGCCCCAGTTCACCCTTCCCTGGAGCTCAGCTCCCTCAAGGATCAGGTCTGTCTGTGTCTGGCCCCACCTCCCTACCTGCCACCCAGCCTTTTTTTATTTTGTATGTCTGTCTGTCTGTCTTGGGCCTGCTTCCTCACCAGTTCCTCCTTGTTCCTGGCACTAACCTACCGTTAGAGCCTGAAGATGTAGTCTGGGACCCTGGACTTGGCAGGCTTTGAGTAAAGCTTTGCAGATCCCTGTTCTGTATTTGATTAAAGGCTGGTTGTTCATGGCCTCTGTCAACTCATAGTGATATGCTGACACCTAGAGCTGTGGTTTTTCTAGACTTTGCCTGTGTAGGAATGTGCAAGTGTGTGTGGGGGGTGCCATGCAGCCTCCAGGCCTTCCCAAGTAAACCCTAGCTTTTCACAATCTCCACAG
Seq C2 exon
AGAGGAGGAACCATGTCACCAGTCCAGTTCTTCAGCTCCCTTGGTGACAGACAAGGAGTCCCCAGGAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001449:ENSRNOT00000001968:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF152291=POM121=FE(12.6=100)
A:
NA
C2:
PF152291=POM121=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]