DreINT0119144 @ danRer10
Intron Retention
Gene
ENSDARG00000104542 | ppt2
Description
palmitoyl-protein thioesterase 2 [Source:ZFIN;Acc:ZDB-GENE-010430-4]
Coordinates
chr19:19274471-19279370:-
Coord C1 exon
chr19:19279316-19279370
Coord A exon
chr19:19275227-19279315
Coord C2 exon
chr19:19274471-19275226
Length
4089 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
GCTTATGGCATGTTGTCCAGGTG
3' ss Score
4.85
Exon sequences
Seq C1 exon
TCAGTTTGGTTTCTATGATGATAATGAGACTGTCGTTGAGATGAAAAACCAGAAA
Seq A exon
GTAAGCATAATTCCAATTAGCATTTTTTATAATTCCAGAGTGATGCCAACACTTGTGAAAAATACACAATGCAGTTCTTCTAACTTTGCTCTGTTTCACTATGGGAATCGCATTAAGCATGACCATCTACAGATGTTTCAATGACAGCTTGTCTGTTTTTGATAGACAGGTCGACCTTAAACTATTCTCCACCTTGCCTATATTACTCAGGTCGCTCCTTTACAGTATCATTCATGCTTTCTTTCCATAAGGGACCATAACAAGCTCTCTCAGCACATCCAGTATTACTGCTGCTTTTTACTGAGCTGTTTTTTGAGCAAACTACAATTAGACTCCGTTTAGACTACATTTACTATAATCTTCTATGTGAAGATTTGCTTTGACACAATCTACATTGTAAAAGCACTATAGAAATAGATTATTGAACTGAATAGTGTCCACATGACTGTAAGCTATATTAGTGGTTGCTTGCATCAACAAACAAGGAGACACCTGGGGTCCGTTCTTCGTACGTGGATTACTCAGTTAGCTGGATTTTGATATTGACGATTTGACACGATCCGGGATTGTTTCGTTCTTCAAAGCTGATCCGAGAGTTGTTGTCATAGCAAGAGTTCTGCTAGGTCAAACCTGATCAGGAGCAGGTTCAATTCATATTAATGGGATTAGATCGGCTAAGTTCAAGCAAAGATAATACAGAAAGTAGGTTCCGAATTCTGATATTTTCTTACAGTAGTAGTTATATACACTTGGGAAAATGGTACATATTTTTTAACTATATATATAAAGTTATAGTCATTAATAAAATAAATAAAGTTATAGATATTAATAAAACGTATGCAATCTGCACCCTCGAATTGAAAGTACAAAGACTGCCTCCTGGTGGTGCAAAGAGAAAACTTATTGATATGAACTTTTAGATCACTTTTGTACAAATTGTGTATAATAGAAATGCACAATATGTGACTATTTTTTTTTAAAGCAATAATACATTTATGCAGTCATAAACATGTTTTGATAGTTAATATGCCAGTGATTTGATGCTTCACAAAAGTTGCAGACGCCTTTACCAATATGAAAATGCTTTTGTAAACAACCAGTTATTCTTTACACCGATTAAAAAACGCCTACTATGATAAAGAAAATCTTTTCTAATTGTAGAACTAAATACATTGATTTGGATTGAAATACATGATGAATACTCTTGACACATGAAAGTGTAAAGCCTGCAGCTCTCAACAAATGTGGAAAGTTATTGCGTGTCATATTTAACAAGCCGTTTACTGCTAATTTGATGTAATTTTGCTCACATAGATAATTGAATATTAATCAGATGATGTCATTACGCTGCTGTGCCGTCAGCCAATCGTTGCATTGCTGATCATGCAACACATGCAGCGATCTCAGATCAGTTTATCCAGACATTCTAATCTGATTCGTGTACTTGTTTGAAGAACCAAATTAGCGAGAGATAAGTTATCAAGATTAAAAGATCCAGGATCTGCCAAATAATCTTGGATCATTTAAGCGAGGTACGAAGAACGGACCCATGGTCCCTTCATTTGCATCAGTTGACAAAGCAGCTAAAATTATGATGAGACACTAGGCTGTTTTTCATCAGTGCGACTTGTTTTCCAGGGCTGTTGAACAGGGGGTCAAATTTAATGTCTAGGGAAAACCCCATGTATGAGAAATAGAAAATGCATCCCTAACTGGTGAGGCAAGTATGGCAGCGGTATGGCCAGGCTGCCTCAGATCTCTTCTCCTTGCAGGAAGATTTAGTGCTCAGATATTTTTCTCTAAAAGAAGTTGAGTGCGGATGCTCTAGCCAACCCATGGCCATTCTTTTTTATGCATTCCCTCTTCTGAGCTTTATTTCTTCCACTCCAATCAGAGTGAGGGAAATGGGCTCATTACTGATACTGATTGCCCCGTGTTGGCCATCCAAGAACTGGGACTGTCTCATGGACTCATTCATTATGTTCAGTATAGGCACTGCAACAGCATCTAGGTCTACTCTCCACTAAGGGAAACCATTGTCTTGTCAGCAACTGTCTCTGGATTTTAGAGACAATAGCTCTAGCGTATAAATGTAGAGGTTTTCAATCACCTGGAGGTTTAAGAAACCACTCCACAAGGAGCATGGCGTCATTAAGGGTATTAATTCAAAATTAATACCCTTAAATTAATTCAATTTTTATAGACTGAATGTGTCTTAACCACCCATAGACAGAATATTAATGTTAAATTGATTATGCAGACTGGAACATGGTGTAACCCGGAATTGATTAACACCTCCCAAAAGAAAAGAATCACGTTTTTACGCAGCTGATGCCCTTCCAGCCACAACCCATCCCTGGGAAACATTCACACACACACACTCGTACACTACGGACAATTTAGCCTACCCAATTAATCTGTACCGCATGTCTTTGGACTGTGGGGAAAACCGGAGCACCCGGAGGAAACCCACGCGAACGCAAGGAGAACATGCAAACTTCACACAGAAACACCAACTGAGCCGAGGCTTGAACCAGCGACCTTCTTGTTGTGAGGCGGCAGCACTACCTATTGCTACACTGCTTCACCAGAATGATGGGTTACTTAACATAATTTCAGGTCGTGAAATTATGTTTGGCATTTCACCAACACTTCCTTCCTTGGATGGGAATGTGAGGAAAATACGTTGTAATGACATTGTAATGAGTCGACCTGAGTTATATAGGTGAGGCAAAGCCTAGTCCCAAAGGCAGTCCCATAGTGAAACACCTCACTCTGTTATCAAAGTAACCCATCCTTTGTTATACTGCGGGATTATTATAAAATGCTTTTAAAAGATTTGTACATAGTTTTACATTTCATATCATATAATGGCAATATTTGTCCTGATATTCACTTTCTTATACATTAAAGATATCACTGCATTTTCTTTCGTCCAGACAATTTTCTACACTAATCCATATTTTGATATAATGCAACTGTATCAATAATGACATTATTCACTGTTCATCTGTTGGATGTGTTGATTCAGTTCATTAATTGTAAAGTTTATTATAATGTTTGATTCAGCCATAGGCATCTCTACAGAGGAAAGTACTGTTTTATTGTGCTGGCAACTATCACACTGATCTCTTTGCCCACTGAAAGCTAATTATGGCCTACACTGTTACAAAATCTTTTGATTAACAAGTTTTATATTTCATGATTTACATGTATTTTCCTTTTTTGTTTACACTTATAAATTATATTATAGGTCTATAATCACTGGTCTGCCAACTTTTGACCTTGAATATTTAATGATTCAGTTTAACAAAGTGACTTTTAATTTACAATTTAGTAGTTTGTCCCATAATGCAATTCAAAAGTACAAATACATGAAGGAAAAACAAAGCACAAAATAAAGAAAACTGTCCATTTACAGAATTTACAGCGAGTAAAAACTGTCAAAAACACTGTTTTTTGGATGAGACATTAAACTTAGGTCCCCCTGCTTTGCTGGTTAAAAAAAAAGAAATCTCAGGATGTACTTTAAGAAAAGTAAATGGAATGTGACCCTGACATCCTCATGGCTTTGAAATTGTATTGTTCACCTGACAAAAGTAACAAACTTTGATTAGAGAAAACTGTGGACAAATTAATTGCATTAGGGATTGATGAATTTGTAAGTTTGGTGAGACAATCATGTTTAGAAAGGGTGTTGGTTCTTTTTAACTTCTACCATGTAAGAATTATTGAGGCTTTTAGGGAAACTTGCAATTTATCAAATGCTTTTTGTATTGTTTCCCAGATCTTAATTTAAATCCAGTCTAGGGTTTATAGTCTGCATCATTTGATTTCAGTATATAATATGCCATTGTAACCTTTATATGGACAGATGCTTGCTTACCAAACCATGCTCAATCAATTTTATTCAAAATGATCCTGGGAAATATATTACCTATTAACCGGGATTTGATACAAAATTTTTCGGTTCAGTTTTTTTGTCTTTTTGATGTTAGTTTGGGGTACATATTGAAGTGAAATACTAATAATAAAAACATTTTGTGAATATGGTATTTATCAACCTCATGCTTATGGCATGTTGTCCAG
Seq C2 exon
GTGTTTCTGATGGACTTGTTTGGACTGAAGACGTTGTCTGCTCGAGGGGATCTGGCTCTGTGTTCAGTGGAAGGCGTTGCGCATATCTTCTGGCACTCCAATGAAACGGTGTATAAAACCTGCATTGAAAAATGGCTTACATAGATTCTGACACAGTACATGTCTTTTTAATTTTTTAACTCATTCATACAAATGTTTGCACTTTTTTAACAGTATTTTAGCGCATTGCATCAGAACAGACATTTCTGTTACAGTGATTCTGCATCCATGGAAAACCCATAGTAGAGATGCAACATGTATTGTGATTACATGTTTACATTTATAAAAGTAAACTAAACATAATGAACAGCCATCAGTGCCTGAGGGAAACATTCTTCATTTTACAAAAGGAACTGGATCTTAGCTGCTGTTTTACTTTGCTTTTGATGTTTTTATTTCTATAATGTTTTATGTGGATTGTGCACTGCAGTAATATTTATGCCTTTCATTCAAAGGGACATGTTTTGTTCTGTCTTAAATCCAAGTACTGTGTTAGACTGAACGTAGAGACAGTGCAATGAGAAAGAAGGGAGATTACAATGGGCAAAAGGATTAGATTCTAAATGTGTTGCATTTGTTGTATATTACCTCTCAACCTTAGGCCCAACATTGTTTGTGTACCATAAAGGGATTTGTCTTTGAACAGTTAAACCTTTACGTTTTGTTACTTTGTTTAAAGCAAAGCTTTGTCTAACAAGTTATTCACATAGTTTTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104542:ENSDART00000158192:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(6.8=100),PF121423=PPO1_DWL=FE(54.5=100)
A:
NA
C2:
PF0208910=Palm_thioest=PD(15.8=87.5),PF121423=PPO1_DWL=PD(21.2=14.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]