MmuINT0125648 @ mm9
Intron Retention
Gene
ENSMUSG00000015474 | Ppt2
Description
palmitoyl-protein thioesterase 2 [Source:MGI Symbol;Acc:MGI:1860075]
Coordinates
chr17:34753607-34754663:-
Coord C1 exon
chr17:34754609-34754663
Coord A exon
chr17:34754433-34754608
Coord C2 exon
chr17:34753607-34754432
Length
176 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
GCCCTCGGCCCACCTCGAAGGTG
3' ss Score
4.43
Exon sequences
Seq C1 exon
CTTCTTTGGTTTCTATGATGCCAATGAGACAGTTCTGGAGATGGAGGAGCAGCCG
Seq A exon
GTAAGCCCCTCCAAAGACTTGCCTTCCCCCTCCCTTTGTCTCCACTTCACTCTGGGGCTCCTTCTGCCTCTGACTCCTGCTTCATGAGGGAGGGAGAGGTTGGTCTGGACATGAGCAGCGTCTCACTCCTGTCTCTCTTTCTTCCATGTTTCCATGGCCCTCGGCCCACCTCGAAG
Seq C2 exon
GTGTATCTTCGAGATTCTTTTGGGTTGAAGACTCTCCTGGCCCGGGGGGCCATAGTGAGGTGTCCCATGGCTGGCATCTCTCACACCACGTGGCACTCTAACCGTACGCTCTACGATACTTGCATTGAGCCGTGGCTCTCCTGAAGATGTCCTCAGTGGTCTCCAGGAATTCCCCAGCCCAGAGATCAAGCGGTGGCCTTGGGAAGCAGATGCCAGGCTCTGGCATGCCTGCAACCATCTTGTCATTCCCACACTGCCCGACCCCCACCAGGGCTCCCCTCCCCCCTCCCCCCCTGCTCCTCTGTGAATGACAAGTCCTGGTCCCCTACCTCATGTCCTCACTTGGGGACGCCTCCACGCTCTCCCTTTCTGCCACGGCTGAGGTTGGGAAGCAAGTGCCAGGTTTTTAACTGTGGCTTCACCGCTGCTGTTGCTTCTCCGGGTCTGGCTGTATCGGAGGAGAACCCAGCCCCTGCCCACCTCAGGGGTCTTCTTCCAGGCCACTCAGGACATTTTTAGCTTCTGTTATCCCCGTTTCCCTCTTTTCTCAACTTCCCTGTGGCTAGCCTCCCCACCAAGAGGGGCACCCATAAGAGGGGGTGTTCTGAGGCTCCCCTATGGGGACAATTCCACTTTTGAAGTGTCAGTGTTGGGGAATATCTGTGGCCTGCAAGGCCCATCTCAGGTTTGGGGATCCCCCAGTCCCTATGATCAGTGTTGGGGTATCCCCTGGGAGCCTAGGTTCTTTGAGGCCCCAGCCCCTCTTTTAACTACCCTTGAGTGGGTGGTCCCTGTATTTATAGAAATAAAAGATCCATTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015474-Ppt2:NM_019441:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(12.6=100)
A:
NA
C2:
PF0208910=Palm_thioest=PD(15.5=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGAGATGGAGGAGCAGC
R:
CAGAGCCTGGCATCTGCTTC
Band lengths:
245-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: