HsaINT1048184 @ hg38
Intron Retention
Gene
ENSG00000221988 | PPT2
Description
palmitoyl-protein thioesterase 2 [Source:HGNC Symbol;Acc:HGNC:9326]
Coordinates
chr6:32162568-32163678:+
Coord C1 exon
chr6:32162568-32162622
Coord A exon
chr6:32162623-32162806
Coord C2 exon
chr6:32162807-32163678
Length
184 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
CCCCTTCGACCACCTTGAAGGTT
3' ss Score
5.42
Exon sequences
Seq C1 exon
CTTCTTTGGTTTCTATGATGCAAATGAGACCGTCCTGGAGATGGAGGAGCAACTG
Seq A exon
GTGAGCCCCCTGGGATTACTTCCCCTTCTAGCCGCTGTCCCACCTTATTCCAGAGCCCTCTCTGTGACTCCTGAGCTGAAGGGTTCACCCTGTGGGGAGGAGGTCCAGGATCCCAGCAGTAACTCACTTTGTCTCTCCTTGTGTCTCTCTTCCATGCTTCCACGCCCCTTCGACCACCTTGAAG
Seq C2 exon
GTTTATCTGCGGGATTCTTTTGGGTTGAAGACTCTATTGGCCCGGGGGGCCATAGTGAGGTGTCCAATGGCCGGTATCTCCCACACAGCCTGGCACTCCAACCGTACCCTTTATGAGACCTGCATTGAACCTTGGCTCTCCTGAGGATATATTCAGGGGTCCCCAGGAACTCCTCGGTCCAGAGACCAAGTGGTGGCCTTGGAAAGCAGATGTCAGGCTTTGGTGTGCCTGTGACCACCTCATTGCTCCCATATTATCCCCCATTTTTAGTAGAGACGGGGTTTTAGTAGAGACTTGGCCTCCCAGAACCCCCTTCCTCTGCTCCTCCATGAATGACAATTCCAGGCCTCCCCTACCTCATGTCCTCTCATTTGGGGGATTGCTCCGTGCTGTCCCTTTCTCTCAAGGCCGAAGTTGGGAAGTGAGAAACCATGTTTTTAACTTGTGGCTGCTTTTGCTGCTGCTGCTCCTCCGTATCTGGCTGTATGGGTGGAGAACCCACCCCCTGCCCACCACAGGGGTCTCCTTCCAGGCCACTCAGGACATTTTTAGCTTCTCTCCTCCCCATGTTCCCTTTTTTCTCTAAAGTCCCCTGACATCAGCCCTCCCAACTCCTAAGAGGGACTACCCATGAGAGTGGGGTTCTGAGGCTCCCCTATGGGGACAGTTCCGTTCTTGAAGTGTCAGTGTTGGGGAATATCTGTGGCCTATGAGGCCCATCTCAGGTTTGGGGATCCCCCAGTCCCTATGATCAGTGTTGGAGTACCCCCCTGGGAGAGCCTAGTTTCTTTGAGGCCCCAGGCCCTCTTTTAACTACCTTTGAATAGGTGTTATCCCTGTATTTATGGAAATAAAGTTCCATTTCCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221988:ENST00000361568:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(6.7=100)
A:
NA
C2:
PF0208910=Palm_thioest=PD(15.7=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATGAGACCGTCCTGGAG
R:
GACATCTGCTTTCCAAGGCCA
Band lengths:
250-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains