DreINT0120727 @ danRer10
Intron Retention
Gene
ENSDARG00000031494 | prrc2a
Description
proline-rich coiled-coil 2A [Source:ZFIN;Acc:ZDB-GENE-010501-4]
Coordinates
chr19:27164716-27165049:-
Coord C1 exon
chr19:27164967-27165049
Coord A exon
chr19:27164865-27164966
Coord C2 exon
chr19:27164716-27164864
Length
102 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GTTGTAACTGTTTTTGCCAGGTT
3' ss Score
5.6
Exon sequences
Seq C1 exon
ATGTATCCACCATACCTGCCCTTTCCACCCCCTTATGGTCCACAGGGACCTTACAGGTACCCACCGCCAAATGAGGCTCCTAG
Seq A exon
GTGAGTTATACGTGCTTAATTAAGCAGAAATTCAGATACTAATATTCATGTTCACAGTCATTTTATTGCCTTTTCTAAGTCTGTTGTAACTGTTTTTGCCAG
Seq C2 exon
GTTTTCTCGGAACCAGGGTGGAATAGGGCCAGATGGGCGACCCCCTGGAGGCCCCCGGGGTGAAGTGGTAAAACGCCCATCCATCCTCAAACAGGATGACCTAAAAGAGCTGGATGAGCTGGACCATGATGGAGATGAGGGCTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031494:ENSDART00000138675:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCCACCATACCTGCCCT
R:
CCCAGCCCTCATCTCCATCAT
Band lengths:
228-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]