HsaINT1028175 @ hg38
Intron Retention
Gene
ENSG00000204469 | PRRC2A
Description
proline rich coiled-coil 2A [Source:HGNC Symbol;Acc:HGNC:13918]
Coordinates
chr6:31625792-31626162:+
Coord C1 exon
chr6:31625792-31625871
Coord A exon
chr6:31625872-31626019
Coord C2 exon
chr6:31626020-31626162
Length
148 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTTTCTTTTTTGTGTACAGCCG
3' ss Score
8.49
Exon sequences
Seq C1 exon
ATGTATCCCCCATATCTCCCGTTCCCTCCGCCCTATGGACCCCAGGGGCCTTACCGATACCCCACTCCTGATGGGCCCAG
Seq A exon
GTGAGCAATCCAGGTCTGGGTTTGTGGCTGGGGGCAGGGGAAGCTTATTGGGGGAGGAGATGGTTTTCTAGCCAGGAGGCTCAGTCTAGGATCAGTCTCGCATGTGGTTATACAACATGCCATATTTCATTTTCTTTTTTGTGTACAG
Seq C2 exon
CCGTTTTCCCCGTGTGGCGGGCCCCCGAGGCTCAGGGCCACCAATGCGCTTAGTAGAGCCTGTGGGTCGTCCCTCTATTCTCAAAGAGGATAATCTCAAAGAGTTTGATCAGTTGGATCAGGAGAATGATGATGGTTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204469:ENST00000376007:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCCCATATCTCCCGTTCC
R:
TGCCCAACCATCATCATTCTCC
Band lengths:
218-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains