GgaINT0123916 @ galGal4
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6192452-6193121:+
Coord C1 exon
chr17:6192452-6192573
Coord A exon
chr17:6192574-6192978
Coord C2 exon
chr17:6192979-6193121
Length
405 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATTTTTGCATCTCTCTGTAGAAA
3' ss Score
9.67
Exon sequences
Seq C1 exon
ATGTGTCCACAACAGCCATCTGAGACCCCTGCGCCATTGGACCGAGGGTCTTTCCCCGTTCCTCAGCTTCGGCTTGAGCCCCGTGTCCCTTTCAGACAATACCAGATGAATGACCAGGATGG
Seq A exon
GTAAGGTTGCCATGACTGTCCCACTTGAGAGGCTGGTTTGGTGTGTGACACAAGCCTTACGCTTGTTGTGTGGGTGAAGTTGTGGGTAGCCAGAGAGAATGCCTGATTTTTACCCAAGTGGTCAGTGCTTTGCTCTAACTACAGCAGCACCTGAAATGTTGCAGGACACTGAGCACTGTGTGTCTCAGGAGCAGGTAGATGTGTAAAGTAGGTGTGTGATTGTGGACTGACAGGTTTGCAGCCCTAGGAAGTGAGTACCAGGTAGATAGGGAAGAGAAGTTTTGCTGATCAGGGAGAGATACTCAGATTCCTTCTATATAATTGGTGAATCAGTCATTTTCTACTGTTAAAAAGTCAACTACACGTTCCTTTGTTTCTAACCAATATTTTTGCATCTCTCTGTAG
Seq C2 exon
AAAAGAGAACAGGCTTGGCCTGTCTCGTCCAGCACGTCCACTTCGACAGCTGGTAGAGAGAGCACCTCGACCCACCATTATCAACGCAGAGAACCTGAAGGGGCTGGATGAACTAGATAATGATGCAGATGATGGATGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCCACAACAGCCATCTG
R:
CTGCCCATCCATCATCTGCAT
Band lengths:
264-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]