HsaINT0016695 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131447085-131447804:+
Coord C1 exon
chr9:131447085-131447206
Coord A exon
chr9:131447207-131447661
Coord C2 exon
chr9:131447662-131447804
Length
455 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
ATCATCTTTTCTTTTATCAGAAA
3' ss Score
8.77
Exon sequences
Seq C1 exon
ATGTGTTCGCCGAAGTCATCAGAAAACCAGGGTACAGTGGAACGAGGCTCTTTTCCCCTTCCTCAGCTCCGCCTTGAACCTCGAGTTCCTTTTAGACAGTTCCAGATGAATGACCAAGACGG
Seq A exon
GTGAGTCCATTGCATTACAGTCACGTGTGTAGAGATGAGTGCGGTGGTGATTCTGGTCAAGATGAGGGGCTGATGAATAGAAGTGCTGTGTCTCCTGGAGACCACAGAGAACTTAACCAGCTCAGCGTGGCAGGGTGTGTGGGGTGGTGGCTGGGATTTGGAGCTGGATGACAGATTGAGTCATGATTTCAAGTGCCTGGTAGAGTTGAAGTTCTGGCACGTGTGTGTTGCTGCTGCCCTAGGCCTTAGCAACCAGCATGTAAAACTGCAGGACAAGGCAGAACTTCTTTCTGGGATGTACTCGTTTGCTCATTATATATTTCTTTTAAAGGAACTGATAGAAATAATTAAATCAAACATGAACCTTTGCAGTGTGGAATTTATTTTTGGAAAGGTATTTGATTTTGCTTCCGTCTGTATACTGGACATGATTCCATCATCTTTTCTTTTATCAG
Seq C2 exon
AAAAGAAAACAGGCTGGGATTGTCTCGCCCACTCCGCCCACTAAGGCAGCTGGTGGAGCGGGCACCACGGCCCACCATTATCAATGCGGAAAACCTGAAGGGCCTTGACGATCTGGACGCCGATGCCGATGATGGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCGCCGAAGTCATCAG
R:
CTGCCCAGCCATCATCGG
Band lengths:
264-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains