MmuINT0023971 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr2:32049900-32050516:+
Coord C1 exon
chr2:32049900-32050021
Coord A exon
chr2:32050022-32050376
Coord C2 exon
chr2:32050377-32050516
Length
355 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCTTTTGTCTGTCTCACCAGGAA
3' ss Score
11.43
Exon sequences
Seq C1 exon
ATGTGTTCACCACAGTCATCAGAGAACCAGACTACGGTGGAACGAAGCTCTTTTCCCCTTCCTCAGCTCCGCCTGGAACCCCGTGTTCCTTTCAGACAGTTCCAGATGAACGACCAAGATGG
Seq A exon
GTGAGGCTGTGACCCTGTGGCCGTGTGTGTCAGTGTGGGACAGTTCATGCGTGAGTGCTCTGTGCTCTGGAGACTGGGGTGGGCGGCAGGACTTGGACCCAGCAAGGAGCGTGGTCTGCAGGGCTAACTCCTGCAGTGCAGGAGTCTGGTAGCACTGTGGTGGGGTTGGCAGTGAGCATGTGGTACTGTGGATGGAACCGAACCGTAGCAAGAATGCAATTGTTCACTGCAGGTTTCTTCTAAGGAAGTAGCTCAGATATTCACTCAGACACCAGAGGTGGAACTCGTTTTTGGAAAGTGACTGTTTGCACTTACAGGTTGACATGAGCCCATCATCTTTTGTCTGTCTCACCAG
Seq C2 exon
GAAAGAAAGGCCAGGCGTGGCACGGCCAGTGCGCCCACTGAGGCAGCTGGTGGAGAGGGCACCAAGGCCCACCATCATCAACGCGGAAAACCTGAAGGGCTTGGATGATCTGGACACTGATGCGGATGATGGGTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
-Bat2l:NM_001159634:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCACCACAGTCATCAGAGA
R:
CACCCATCATCCGCATCAGTG
Band lengths:
255-610
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: