DreINT0120788 @ danRer10
Intron Retention
Gene
ENSDARG00000053158 | prss56
Description
protease, serine, 56 [Source:ZFIN;Acc:ZDB-GENE-070912-579]
Coordinates
chr2:45202196-45203525:+
Coord C1 exon
chr2:45202196-45202385
Coord A exon
chr2:45202386-45203416
Coord C2 exon
chr2:45203417-45203525
Length
1031 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATATTTGTCCTGTCACTTAGGAG
3' ss Score
7.11
Exon sequences
Seq C1 exon
CTGTGTGTGGCCAGCGCTTCTCGGTCACTCAGAATGGGACTCAACCCAGGGCTCGTATCATTGGAGGATCTCCTGCTCCTCTGGGCAGCTGGCCATGGCTAGTGAACCTGCGGCTGGACGGGGCTCTGATGTGTGGAGGTGTGCTGGTGGATAGCTCGTGGGTCCTCACTGCTGCACACTGCTTCGCTGG
Seq A exon
GTAAGAATACTACAACTAATTAAACTTTTTTTTTTTTTAAATGACTTTTTTTTAAAAAATGGCATTGAATACTATGTAACGACAATATAGAATCTTGAATCAATAATGATTGTGCTGTTTGTGACGGAACAATGTGCTGCATTTGAAAAACATCCTCCTCACCTAGGCTACCTTTGTTTAATCAAAAATATAGTCAAAACTGTAAAATTGCGAATTATTATTACAAATAAATTTTAACTGAAAGCAGTTAAAAAATGTATTTCTGTGATTCAAAGCTGATTTTTCTGTATTATTACTCTAGTCTTCATTGTCGCATGATCCTTTACAAATACTGACCCCAAACATTTGACCAGTGAACTTTAAATGTGCTTTCTTATTTATTTTATTTTATTTTACTTACTTATTTTATTTTAATTTTTTATTATTATTTTACTTTTATTTTATTTTATTTTATTTTACTTAAACTTAAATTTACTTTATTTATTTGTTTATTTATTTATTTATATTTATTTATTTATTATTTTATTCATTTTTAAAAAATTTTTTATTTAATTTTTTTCTGTTTGATTTTCATTTATTTTATTATTATTAATTTAATTTAATTTAATTTTAATTTTATTGATTCATTTGTTTATTTAAATTTCTTCTATTTGATTTTTAATTTTGTTTTATTCATTTATTTTATTTTTTTACTTTATATTATTTAAGTTAATTTTATTTTATGTATTTATTTAATTTAAGTATTTTATTTTTTATTTTATTTTATTTTATTATTATTTTGATTGAACTTAATTTAACATAATTTATTCATTTTTAATTAATTTAAATTAATTTAATTTAATTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTCATTTATTTCATTTTCATATTATTTCATTTTCATATTATTTGTCATGCGCTAACCAAAATTTCTAACTCTTAAAATGGGTGTTTACAGATTATAATGTTTTGTGAATACCTGAAATAAACAGATATTTGTCCTGTCACTTAG
Seq C2 exon
GAGCCGCAGTGAGAGTTACTGGACTGCAGTAGTGGGAGAGTTTGACCTCACTAAAACTGACGCGGATGAGCAGATCATGAAGGTCAATCGCATTATTACCCACCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053158:ENSDART00000075152:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(31.0=68.8)
A:
NA
C2:
PF0008921=Trypsin=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCCAGCGCTTCTC
R:
TTCGGGTGGGTAATAATGCGA
Band lengths:
294-1325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]