GgaINT0031582 @ galGal4
Intron Retention
Gene
ENSGALG00000004463 | PRSS56
Description
protease, serine, 56 [Source:HGNC Symbol;Acc:HGNC:39433]
Coordinates
chr9:15072289-15072679:+
Coord C1 exon
chr9:15072289-15072492
Coord A exon
chr9:15072493-15072570
Coord C2 exon
chr9:15072571-15072679
Length
78 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGA
5' ss Score
5.85
3' ss Seq
GCTCTCCATCCCTGTGCCAGGAA
3' ss Score
6.9
Exon sequences
Seq C1 exon
CTTTATCCCCCCAGAGCGCTGTGGGAGCCGGGAGGACCCCCCCCCCAACAGCACAGCCCCACGAGGACGCATCATGGGCGGCAACGTGGCCAGGCACGGGGCTTGGCCGTGGCTGGTGTCAGTGCGGCTGCACGGGGAGCTGGTGTGCGGTGGGGTGTTGGTGAGCCGCGCGTGGGCTCTCACCGCCGCCCACTGCTTCAATGG
Seq A exon
GTATGATGTGGGGATGGGGGTGTGGGGTGGCACTGCTGTCCCTCCTGCCTAAATCGCTGCTCTCCATCCCTGTGCCAG
Seq C2 exon
GAACCAGAACGAGTTGGCGTGGACGGTGGTGGTGGGCGACCACGAGCTGGGCAAGGCAGACCCCGGGGAGCGGGCAGTGCCCGTGCGGCGCATCGTGCCTCACCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004463:ENSGALT00000007102:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.486
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.1=63.8)
A:
NA
C2:
PF0008921=Trypsin=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGAGGACGCATCATGG
R:
CACGCCAACTCGTTCTGGTTC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]