RnoINT0118821 @ rn6
Intron Retention
Gene
ENSRNOG00000029865 | Prss56
Description
serine protease 56 [Source:RGD Symbol;Acc:1563955]
Coordinates
chr9:94280413-94281070:+
Coord C1 exon
chr9:94280413-94280602
Coord A exon
chr9:94280603-94280970
Coord C2 exon
chr9:94280971-94281070
Length
368 bp
Sequences
Splice sites
5' ss Seq
CGGGTACGA
5' ss Score
8.06
3' ss Seq
CCCCACTACTTGCTCTGCAGTGC
3' ss Score
6.06
Exon sequences
Seq C1 exon
GTCCATGTGGAGAAAGACGCCAAAGCGTTGCCAACACGACCCGGGCTCACGGCCGCATAGTCGGTGGCAGCACGGCTCCATTGGGAGCCTGGCCTTGGCTAGTGAGGCTGCAACTTGGGGGCCTGCCTCTGTGCGGGGGCGTTCTGGTGGCAGCGTCCTGGGTGCTCACGGCTGCACACTGCTTCGCCGG
Seq A exon
GTACGACGTTGAGATCCCAGGCACCTGCTCAGCAGGGCTACCCAATCCGATGGGAGTCTTAGCACCCATGGGCCAAAGCACAGCGAGCAGGTGTCTGCTGCCCCCTAGCGGGAGCTGGCTCCCAACCTCAAGCTTCAAAATGCCGGTTGCGCGGTGGGGGCTGGGATCCCAGGGTAGGAGGACATCACACTGGATTTTTCCACTGTGGGTATCCGCCCCTTCCCGGGTCTTCCTCTCTGACCCTAGGGTCACAACAGCCACATTTACAGGCTCACTGGAGGGTGTGGGTGCATGAGGGGGCTGGGCCTCCAAGGGGGCCTCATGCCACCTCTGTCCCTGATCCTTTCACCCCACTACTTGCTCTGCAG
Seq C2 exon
TGCCTCGAATGAGCTTCTGTGGACTGTGATGCTAGCCGAGGGACCCCAGGGGGAGCAAGCAGAGGAAGTGCAGGTGAATCGTATCTTGCCCCACCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029865:ENSRNOT00000065805:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=NA C2=0.412
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=68.8)
A:
NA
C2:
PF0008921=Trypsin=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGTGGAGAAAGACGCC
R:
GGGTGGGGCAAGATACGATTC
Band lengths:
286-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]