DreINT0125485 @ danRer10
Intron Retention
Gene
ENSDARG00000074023 | rbms1a
Description
RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
Coordinates
chr11:10956426-10959407:+
Coord C1 exon
chr11:10956426-10956505
Coord A exon
chr11:10956506-10959291
Coord C2 exon
chr11:10959292-10959407
Length
2786 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
3' ss Seq
TGTCTTTGTATGGTTTACAGGTG
3' ss Score
8.96
Exon sequences
Seq C1 exon
GATGGAGTCGACAGAGAAGTGTGATGCCGTGATCTCTCACTTCAACGGGAAATTCATTAAGTCCTCTTCTGGGATGCTAG
Seq A exon
GTGCGTATTCATCACAATTTTTTTCTATTTCTTTCTTTATATATTTATATATCTAAATATATAAACTGTATTAACTGTATTAAGCCTTTGTATCAGTATTTATACATTTACAAAATGTATACTCAAATACTGGGGAAAATAGTAAAAAAATATAATTATACAGAACCTTTTTATTAGATCGTCTTTGATTTTGAAATCAACTTACAATTGATTCCCATTTGATGTTAGCATGTTGCTAAGCTAATGAAACTATACTTACTTAGTTCAGATGCAAAAGCCGCTAAACGCCACTTCCGCCAAAAATGAGCTAATGACATTGGGCTTTATCATACACCCGGCAGAATGTGGCGCAAGGCACAACGCAATTGTTGTTTGCTAGTTTCAGCTTGGCCCAAGGGTCGTTTTGACGTTTTGCGAAACGCTGTTTAAATAGCAAATGCATTTGCGCTCGTATGTGCGCCCATAGGCGTTCTGGTCTAAAAAGGAAGGCGTGTTAAAGCGCATTGCTGGCACGTTGCTATTTTGAGAAACTATAATAGATTTTTCAATAGACCAGAACAAAGCCGGTCTATTGTCCAGCGCGTTAGTTGTGCGCCTCGGTTACACACTGCTTAATACACTCAAGATGTAGAGCAATACGCAAATATCTTTACATATGAAAAAGAATAAAAATATTAAGGATATATATATAGGATATAATAAGGATATATATAGGATATAAATATGAAGCAATAAAATATTACAAAACATAATATTTTCTAGCCTACATAAATTTAAAAACCATACTTTCATGCCTTCTTCATCTCCGGAGGCTTTTACAGTTTATTCATAATAATTTGCTTTTGTATAATGTTATCATTATTAGCAGTATTTTTTTATTATATCCAAATTTATATTTGTTTTTATTAAAAACAAACTTAGATTTGTCAACCTGTCAGGTTTTAGACCATATGGGGCACACCATGTGTGTTTGGATATAACTCAGTTTTTTGAGCACACTTCGTTATTATTGTTCATTTATTCGTCTGGAAATTAGAACTGAATTTAAAAATAGTTTTGAAACAAATCTTTGTGCATAACAAACTAAATTAATTATTTATAGGCTAATTGATGTCTATGTGTACAAGGCTTCCCTATCCACGAGAGCGAATGTGAAAGTAGATTATGAGAGGCCTTATCTCTCATTCTCGTGCTGCATATGCTCTGTTTAACTGTTTTCTTTCTAGTGAAATGCTCAGTTTTTTCACTTACAAAGTTGTCATGCAAATAGCAAATGCACCATGGCACGACGCAACTGGCTCTTAAAGGGAATGGGACATGAGACTCTGATTGGTTTATTCTCAAAACACACCTATAACTCATTAAGAAAATAAGCTCAACCCTTTTAGACCATGCCCCATAGGGCAAAGTGGATTTTTCCGTCCTTATATTAGCAAAAGTGGATTCTGACACGCCCTAAATGCGTTTGTGCCCTGCACTTTGCAATTTGCGCATGGACCGTCAAAATAGAGCCTATTGAGTGAATGCTTTAGGCACGTACTACACCATTAACAAATAGATTTGCTTCTAATTATCTAAAATCGCATCATCAGCGCATTTAGAAATAACAGTTTTTTGGCAAAAGCCACTAAACGCCACTTGCCTTTGACAGCAAAAAGCCGCTATATCCCGGGAACCAATCAGAAGCGTGAATCGAATCATACGTTTCCAATGTAGCAGTGCACTGATATGCTGGTTTTATAAGGATATTGTTCATTCCGCTTTCGATTTTAAAAGAGTTTGATGAACTGGATTAGCCTGTCTGACTGACAGTGATTGGCAAATGAAAACGTCTCTTACCTCAAAACTCTGTGCATTATAAGAAAAAGAAAACACACTGTACAGTCGGGAGTGTACCATGCATTTAAAATGTTTTTTTGCACAGCGACGCTACTTTGAATGAGTCCAAATTACTATACATCAAACGGCAACTCCATTTCACGAAAGATGGTGTTCTTTTATCCCACATGGATGCTATAAGGATAAATAAGTAACCATGACCTTAAGTATAGTGAGAATGAATGAATCCCCTTTTTGTCCAGTAGGCCCACCTTGTGTTTTATTAGCTAATTTAAGCTATTTTTTAAAAGATAAATATTAGTGTACTAATACTAGTGTATACACTTATACACTACGGCCAATTTACCTATAGCTTATGTCTTTGGGGAAACTGGAGCACCTGGAGGAAACCCACGCAAACACAGTGAGAACATGCAAACTCCACCCAGAAATGCCAACTGACCCAGCTGGGATTCAAACCAATGACGTTCTTGCTGTGAGGCGACAGTGCCTCACAGAAACTATACTTGAAATCATTTTGAAATTTCACAAATATTGGGTTAAATCGTTAATATTAAATTATACAGAACCTTTTAATAGATTGTCTTTGATACTGTATCAAATTTAAGTGACTTACAATTGATTCCCATTTGGTGTTCGTTTGTTGCTATGCTAATGGAACTATACTTTAAAATACATTAAAATGCAAAAATACACAAATATTGTGTAAAATAGATCACTTTTAATAGTAAAGAACAATTTTAATACATTCTCTTCAGTGCTGAATTTAATTTAAGTGACTTATAATTGATTCCAATTTGACATTAGCATGTGACTAAGCTAAATGACCTATACATCAAAATAAAGGAGCTATACTATACATCAAAATGGCTCAAAATATCTTCACCTTATTTTAATAATGCATATACAATCTGTATGAGTACAACATGTCTTTGTATGGTTTACAG
Seq C2 exon
GTGCATCAGAGCCATTGCTGTGTAAGTTTGCTGACGGCGGGCAGAAGAAGAGACAGAGTCAGGCTAAATACATCCCCAATGGACGAACCTGGACAAGAGACGCCGAGGTGAGACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074023:ENSDART00000064860:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(33.8=82.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]