GgaINT0046218 @ galGal4
Intron Retention
Gene
ENSGALG00000011132 | RBMS1
Description
RNA-binding motif, single-stranded-interacting protein 1 [Source:RefSeq peptide;Acc:NP_990355]
Coordinates
chr7:21246034-21254211:+
Coord C1 exon
chr7:21246034-21246113
Coord A exon
chr7:21246114-21254095
Coord C2 exon
chr7:21254096-21254211
Length
7982 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TACTCTTTCTTCTTCCTCAGTTC
3' ss Score
9.38
Exon sequences
Seq C1 exon
GATGGAATCAACAGAAAAATGTGAAGCAGTGATTGCTCATTTTAACGGAAAATTCATAAAGACACCAGCAGGAGTTTCTG
Seq A exon
GTATGTTGCATGTATTTCTAACGAGATGAATGGATGGGTTACTGCTTACATAGTGGGATCCTGTTAGACTGATTGTTGTATCTGGCTTCTCATTCAGAGGCAGCCTTATGAAAATTAAACTGTTTCTTGTTGGATGACTGTAATAGTTGCTCAATTGTAATATGGTTTATCACTTCCCTACTCTAAGTCTTTTCTAGGAATCTGTTCTCGTAGCAGGTAGATGACCAGCTAAGATACCTTAGGCCGGTTACGCATGAATTATACCCCACATAATTCCAGCCGAAGTCAGGAAACAAGGATGTGTTGTATGTGCATCAGAACTGAATTTGGCTGATTTTTCCCTGAACAATTTATCTTTGTAAAGAGGTGAAAAATGGACAGCTTTTGCCATCTGTTGATGATTTTTTCTAAACTAAGTGTGAAAAAAAGATTTGATTAAAAAAAGTTAAATTCTGTAGCAGTGCCTTTATGCCAGGCGTTTTCTCTCAACTCAAAGCAGGCTTTGAGGTTCTTCAGGAAGGTAAAAGGAGGTAAACAAAGATAATTCTAGAAATATTGTGCAATGCAAAATGCAGAGATGCTGCAGTTCTTTTGTCGCATCAAGTTCCCCAGTGTGCCATCAGTGTGCCAGTGTTTTGTCAGCATTGTTTCTAAAATAGTAAACTTAGCATTCCATTAGCTCAAAAATGAGGGAAGGAAATTCAGAGCAGCAGAGTAAAACAAAAAGAAATCAGGATAACATCGGAGAAAAGAATGCATGCCTGACATTCCAGCGTGCTTTTGGTAGCCATTTTATTGAGGGTCCCAAGTGGGAATTTTACAAATTACATAGTTGACGTGGTTACTGAACCACCTTTATGCCACTGGTGGAATGCTTGCCAGAGCCCGACCTTGGCACAGAGGAAGAGGGAAGCAGCCATCAGCAGGCAGCAAAGAATGCAGCTTGCTCAGTAAGGCTGCATACATGTCTCATCCCTAAAAGATTACTCCAGTTTGAGGCAGTCTGTGCTGCGGTAGGGATGGCAGGCTACTTCAGAGCACAGGAAACCACTCCCTTCACCAGCGCTAATCTAATGCAGGGCTTTGACTTTGCTGGCTTTTGCAGACCCTCTGCACTGGGATTGATTGTCAAGGCTACAATTATTTTGTTGAAACTTTGTTACGTGTAGGAGCTTTAACATTTATTTTTCTATTTCATATATTCGGCGATCTGGTTTATGAGATGGAAAATCCCTCTAGGGGTAAGGAGATAATGGGGTGATTTTCTCTGAACGTTGACTGTGCTCTGATCCACCCTCCGTGATTAGTTTTACAGCGCTGCTATTGCTTGGACATAATTAAGAGTAAAATGTACAGAAAAACCAAGAGTTCAAATTAACATATAGGGAATTCTATTCAATTAGAGCTAGTAAAAAGCTGTAATAGAACCTCCTATTAGTGTTTTTAGTGTTTATTCTCACTTGCATTGTGCTGTTCTCAGTGAGTGAGCCATTGAGTGTATCACGCTTACCATAGTCTCAGTTAAGTGAAATGAGTCACGTGCGCCCTGGTGCTGAATAACTTTACAAATGACTAGATGAACATTCAAACCAAGATCCCCGATGCTGTTGTATATGCTGTAGCCTTGGCTGTATTTAGCTGTACTTTTCCATGCTGGTGCTGTGAAGTTTTGTTGCTCCATGGGATGATTTTTACAGAGTTCCATTTCTTCCTGGATGTCCTCACCACGTAGCAGGCGTGTGCCCAATAATGCAGGCTTATGGGAAGCTGCAGCTTGACAATGCCCTGCGTCCTGCCAAAAAGTGAGGCAGAGCCGCAGGGCAGCTGTGGTTTTAGGCTACCTGCACACAGAGAGGAGGATGCAGCAGGGAAAGCTCTTGCATAAACAAAGATTAGGAAAATGTTTCAAAATGGATTAGCATCTTTTGGGGTTACAGAGCAGCAAGTTCAAGTACATAGAAAATAAAACCATGGAACTGGAACTATGTTTAAATTAAAACACTGTGTCCTCGAAACTTGGCTAAAATCAGCAAAGGGAGCTGGCTATAAAAACACTGTTATCAGGACGAGGAGGGTAGGAGAGAAGGGCCTGTAATGAAATAGGTGTGGGAGGAAGAACATCTGTTTAACAAAAACATGCTTTCATAATGCATCTTTGTTGTTTTAACTAAGTTTGGGCTTAAGTAGTGGAATGGGTTAAACATGGTTATAAGAAGCATAGGAAGACAGAACAGAAATTCTTTTGTGAGTCTGAGAGGGCCAAGGGTAGCACAGGGGGTTCTCAAATGTGCCGACTGTGGAACTTCTGAGTGACAGAATGCCTCACACTGAGCACTGATGATGTGAATCAGCAACAAGCTGCTCAGACTTTATTTCCCTAGTCCATAGTAGCTTAATGAAATATATTCAATATTTAGTGTGTCCTTGTTTGTCTTCTGTCAGGAAGTAGAAGGTTTTGCTCAGAGAGCAATTTCAAATGCACTGCAAGTTGATATGATCCTAAAACTCCTAGAAATGGTGCATTCGTTTCACTGCTTGCTCTCATCTACTGATTGTACTTTCATTAGGCAAGTCATTGCAATACTTTTTTCTGTTTTGTGGATTGTTAACATCTAGTCCAATTCTCTCAGAGCTTTGACTTTTGTATTTCATACCCTTCTGAACTGAACATTTATGCTATTGCTATAGTCATGAAAAGTACTTTTTAGCATTTAGTTCTACTCTTCTCTGTAAAGAATTACTGATTTCAGTGAGTTATTTAAAGGTTTTTTTTTTTTTTTTTCTATGAAACATAAACCTTGTGAGGTACATGGGAGGAAAGAAAGATTAAACCCTCATATGGAGCCAGAACACAGAAGAAGAGTAGTGAGGACAGATATAGCATACTTCTAGCATCCTTCCTTTAAAAAACGTATTTAATATTTGCTATCTTTGTGCTTTGTGCTGGATCTATAACAGTTGCAGAAATGATCTGCTGGGCAAAATCATGAAAGGCATCTCCTCCCTACTGCGGGAGCGTGTAGCTGCATGATGATACATGAGAATAATTATATAAATAATTACATAAAGCAGTTATTCTGTAGAATACATAAGGACACACCAAGGTATGTAAGTCTGATTGTATTCATCTTTCTTAACTTTTTTTTTTTTATTATAAGGTGAAGAGTTACAAGAGCTTTCCACCTCTTGAATTATTTTGTGGCTCTTTTACTGAAAAGAGCTTTTTTGTTGTTTTGCTTATGTGCATTTTTTTCAGTGGAAAAAGGCAGAGAGCATTCTTGCTAAACAGCCCATAGTATTTTTGCTTTTGCTCCAGACATGATGGGTGACAGCGATGACCCAGATGTCATAGCTTATCCTTGTCTCACCCTCCCCTTCCCTTTTGCAGCAGGCACTGATCACTTGGACTTTGTTTCAGGGAGAAAACTGGGGGCAGGTGTGAGAGCCCTGCTCCTGCCACATTCTTAACATTGGCCAGGGAGAAGTGTACCACATGTGGCAGACACCGTTTGAAATGCTTCTAGTCTTGATTACCTGTCTAGTGCAGGAGAGGAAGGAAAATGGACTGCTGAAATTATCTTATTTGCTTACCCTTTAGAAGTATCCAGAAATCTATTGTTGTAGAAATCTATAAAGAGACTTCAGCCATTTCACCATAAACTCACCTTTTTTTAGTCATATTTCACAGACCCTTTAGAAATAATCCACAATCCACTGTCTGAAAACCATGGCCAAAGGGTATCAAAAGGTCACTGTTCTGGTGTAACTCCTGATTGTCAAACTGAAGGCATCAGAGCCAAGATTTTACCCATTAGATCAAAGATTAGGAGCTTTTCCTGTTCTAGTTCTCATAGTTTGTAATTGCTCCTTAGTTTGAAGGATCACCATTGGAAATGAAAAGAAAAATACTTATTAAACTACTCAAAATATCAAAATGTTACTCTTGTGACAGATTAGTAAATCCTGTGTAAATTATTAAAGAAATGTAACCCTGAATGCTGTGTATAAATGAAGATTAGGATGGTGTGAGGAATATGTATTTTGTTTCTCTTGAAACCTACGAAGCTCCTGATATTTGATATCTTGGATTGCACAACTTATTTTTTAATTCCCACTGCTTTTGGCAGAAGTTTCTAGCTGTACAGGCTTGCCATATCATTAAAGTGATGTTTTAATGTTAAGATTCATTAATCTCATATGCTTTGTCACTAGCAAATATGTAATGAAAGTCTTTAAAAGGTGTAGTTTAACAGAAGACTGATTACAAGAATAGTATTTTAAAACCTGTGTTACATTTTTGAATATCTGAAAGCAGATCTTACTGAAATGTTGTCAAATTAGCCATGTAAAGTCAAGAGTGCAACCATGAAGCCCGATCGTATCACTTGATGTGATCAGTGTAGACATTGAGCAGATGAAGGTTGAATTCTAACGTACACATGTGCACAACGTGAATGGCAGGGAAGTATTTTCTCTCTACACTAACATTTTATTCACTCCTTCCTTCTGTTAAGATATTGGTCCTGAAAGGGGGACGATTCAGGGCAGGGGGAGCTGCCCAGCTCTTCCCACAGCCAGGCTTCAATGCACTGAAAAGTGTGTGTTTGTAGACTGTCTCTGTGGCAGTAGCTCATCATCTCCATCCCACCTAGATGTCTGCTGGTTTTCATTAAGCATCAGCAGAGTGGGCATTTTCCATATCTTAGCTGGAGATGCATAAATCCACTGTAAGTCATAGCCTTTTAAATCAACCATCTCTTAGCTGTGAATGCAACTCTGAATATTTATGCTGTGCCTCTCTGTCTTGCATATACAGACAAATCACCGAGTGATTAACAGTTCCCTTCATCTGGGCCTGCAAACTTCCCAACAATTAAACAATAAGAATGACTCTCCCTTCCTTCCTGGATCACAAAAAAAAAAAAAAAAAAAAAAAAAGATTGCCTGCCTGGTCTGTAGGGCTTGCTGCAGCTTTTTCTTGTGTATATGTAATATATTCATGTTTATATGTGTTAGAGAGAGAATATCTTATGTATCTTAGGAGAAACAGGAGGAAGGCTAAACTGAAGAAATCAATTTCTGAAGGGTTGTGAATATTCTTCAGTAGGAGGGGGATCTGTAGATCCTACTGCGCTCCTGTGAAGGGTTATCTCCTTCTCTTGAGCCTTCTCTGATGACCACCAGTCATTGCATTCCTGAAGCGATGAACATGGGTAGTGCTCAGCTCACAGGGATGGAAGAGCAGCCAAAAACTGAGGCTTTTCACTGCAGATGTCCTCCCTATCAGCTTTTAGATCTTGAACTGGAATCAAGGAAGACAAAAGCTATACAGCCTTCTCACAGCAGTTGGTGGTATGAAATATGCAGTCTACTGTTTTTTTTTGTTGTTATTTTTTTTTTCCTTTTAATGTGAGCTGCATCATTTGGCATCATTTATGGACACAGTGGGGAGCAAAAGAAGCTGGAAGGTCAGAATCACAAGGGTTCCCATGACCAGATCTGTGCTTAGTAAGATGGAGAGCAAACTTCTGGCAAATCACAAATAATTGCCTTAGTTGTTTGGGGAGGAGAGGGCTCACAGCTACATACACTGATATTACATACATGCAGTCCAACAGATACAGATCATTTTTCTCCCATTATTTATTTATTTTTAAATTTGTCAGGGACTGTTTCCAAATTCTCTATGGGAGATGTTTCATCATTTAAAATTAAGTTGTGTTCAGTCACCTAATGACAAAAGTCATTTATTCTGAAAACACTTTTTTTAATGAACGTTGTGTTCAAACAGTTGAACAGATTTGCTCCGACTTTCCAAAATAAATGATCTTTATCTTGAGACAGTGATGGGAAATGTAAGCCCAAATAACCCTTTCAAAAGAGTTTTGTACAGCTCACTATGGGGACTCCTAAGGAAGACATAATATGGTTTTAAATAAAGTGTTTACTATTCGTGAGTGCTGTAATACTGAATCACAGGGCTAGAAACCTCTAATATTGTTGGGTGCTTTTGTATGCCATTCTGCCATTCTAAAGACTTTTTTTTTATTATGTCTTCCAAAAAATTCAAGTGTGTACTTTGGAAGCCACGTGTGCTTCTCACCATAATAGATGGTTTGAAATAATTCATAAATAGGCAGGGATTTCTACTCAACTTGACAAATGGCTTTTTTTGTTTTGGGTACTTAACTGCTTATATCTCAGTGCTCTGTTTCTGATGAATGTTTTTCCTCAGCAAGTAAAATCAAAGACCAAAATAATTTCAGACCGGATCCTGACATTTTTAGCCATGTTCAGTAATATGTTCTGTGATTAACTTTCACTTATTCCAGTAGAACTTAAAGCAGATTAAAATGCTCTGTGATATGAGCACCATCAATTTGTCCTTCAGTCTATTGATACACTGCATTTTTACCCCAAATATGCCAAGAATTCTCTTGATAGCAGACCCCAGAACAAAACTGTTCTGGTAATGCAAAAAAATCCCTTTAGAAACGGAAAATTCTGTGGAGATGATTCTCCAGTTTCTGTCTCCTGCTTGAGGGTTTCTGGTACTTCATTGCACATTTACTCCATTCTTCATAGTCTCCAATATTTTTCCCATTTATTAGCCTAAGCTTTTCCTAGTTCATTTTATGGTTATAGGATTTGAATTACCATTCTCTGTAAGACGATCCATTTTAAGTTAGTTCCGTTGTCAGGTACTGAAGTCTGACTCTCTGAGATAAAAGTTATGTGGCTGCTAAATAGCAGTGTATGAGCCACAGCAGTGCAAATCTCTGAAGGTCACCTGATCCTTTCTGGGATGAAACAAGCAGCCACACTCCGGCTCTGCCTCCCAGCCCATCCACCTTTCCTAGAGAAGGCTGTCAGTGATGTATCATGTAGGAAGTGCGTATTTTTTTTTCCCAGTAGAACCAGAGCTACTATTTCATGTGTGCCATTCAAAACCAGCGATGACTTGGCCAGCAGCAGGCTGTGTTTGGGCTGTGCCAGTAATTTGGAAGTTAGATTCTGGGCCGGATTATTGGTCCCCTGAGGTTTTCAGTACTCACTGTTCCTCTGACTTAGGGAAGTACCAGTAGTCCTTTTCAAATGCAGGCAGAATGAAGGGCATGTCAGCACTGGTCGTGGTTTTACTAATAGATTTTATTACAGGATATAGATACGCTAAAATTTTCCTCTGGGATGATTTTTTACACACGGTCCCCCCACCCCTGTGTGTTTACTCTGCTCTGGGACATTTGGACATTGTCAGATCCGGCCTCGTCTCATTCAGGTGTTTCCAAACAGAGAACGGCTCAGAGGAGTGTCACCTTAAAGCTTAGACAGCTCATGTCTCAGGAATTACTGGCAGAGAAATGTTCACATCCAAGTCATAACAGAGCTTCCACCCTGTGATTAGGGAGGGTGTGGTGTGATGTGGCTGTGTGCTTCAGCCACGGGTACGCAGAGCTGTTGCAGCTTAAGCCCATAGTAAGGAAAGAGCACTGTGCTAACTTTTGTTTTTTGATTGATTGCATTTCAGCATTGATGTTGTGGTAAGGATTATGTTATGCCAAAACTAAAAAAGCATATAGCAACCCCATTTAATGGCATTTTGCAAAGAATGAGATAAAAGAAAAATCTTGAAGAGTTTATGGTTGCATTACATGCTCTTTATAGATCAGAAGTAGAAAGGGAATGGAAAGTTGTATCATTTTTTTCAGTGCAAGGTGACAAGAGATAAAGATGGCAAGTCTATCTGGTAGATGTGACTAAGTGGAAGTATGGTGCAGCTCTTGTCACTCTCGATGAGCAGAACTGCTTGAAGCTTTGGGACATTACTGAGCCTTCCAAGGAGAGGGGAAATATTTGAAAATTTTTGAAAAAATTTGAAAAAATATTTGAAAGCCATTTCACTTATGTATTCTTCTCCTTCCGTATTTGTACCTCCCTATATATGAATAGTACTGCAAGTAATACTCTTTCTTCTTCCTCAG
Seq C2 exon
TTCCTGCAGAACCTTTATTGTGCAAGTTTGCTGATGGAGGACAGAAAAAGAGACAGAATCAGAATAAATACATACAGAATGGAAGAGCATGGCACAGAGAAGGCGAGGTGAGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132:ENSGALT00000018146:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.359
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(31.8=75.0),PF072716=Cytadhesin_P30=PU(16.7=96.4)
A:
NA
C2:
PF072716=Cytadhesin_P30=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]