DreINT0130986 @ danRer10
Intron Retention
Gene
ENSDARG00000059460 | sbf2
Description
SET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
Coordinates
chr7:66918038-66922477:+
Coord C1 exon
chr7:66918038-66918139
Coord A exon
chr7:66918140-66922291
Coord C2 exon
chr7:66922292-66922477
Length
4152 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTAT
5' ss Score
4.29
3' ss Seq
CTCTTTCATTGTTTCTGTAGGTG
3' ss Score
10.57
Exon sequences
Seq C1 exon
ATACACAAGCTGCTGCAGCTGGCTGTGGTGGCAGTGGAGTTGCTGGACAGCGGATCATCTGTACTAGTTAGTCTTGAAGAGGGCTGGGACATCACCACTCAG
Seq A exon
GTTTATTTTCATATCATAATGTATTTGCTCATGTGATTCAGATATTAATCACATTGTTTATAGGGTTAGTTCACCCTAATTAAAGGTGATGTAGTTACACATGTTCCATGAACTTACTATAGTAATTACAATGAATTATGCATAACTGCTAATAATTAACCCACGTTGTAACCCCAACAATATAGGAAGCACATGCACTTGATATTTCTCAATAGTTAGACTGTAATTACAGTATGTCACCTTACAATTAACTGTGATCAAATTCTCATCCTCATGTCATCCCAATTCCCAAACCTTCATTCATCTTTGGGGCACAAATTAAGATATGTTAGTTGAAATCCAGGAGCTCTCTGACCCTCCATAGACAGCAATTGTCCTGAGTTGGTTCAAAGTCCAGAAAAGACTCAAAGTTCAGCACATTCAGATATTAGTTATCCTGTTTATAGGGTTACACCCCATTCACACGGGGCCTCAGCATCAACGCTTCCCATTCACTTTGAATGGATGACTTCAGGCATTGCCGAACTGCATTGTGGATCCGTCAGTGCCGCTTCAGAGGTGTTGCTCGCTGCAGAAGTTGGGACTTGCTCAACTTTTCAAGTGCACGACAGAAGCGTCAGCCAATCAGATCACTGTATCCAAATACACCAGCTCAGACAGTGGCCTATTGCTGACTAATTCAATTGGCTGACGCTGCTAAGATGATCGCGTCAGCCCGACTTCAGACACGCCCTCTGTCAAGTGTAGACGCTGAAGCCCCGTGTGAATGGGGCGTTAGTTCACCCAAATTTTGCAGTTCTTAGTGACAGTTTAGTGTAAGGTGACGTAGTTACCCATGTTCCATGCACTTACTATAGTAATTACAATGAATTATGCATAGTTACATGTAACAAACCCCAACCATAAAGGAAGCACATGAAATTGCTTAATTTTATTCAATAATTAGACTGTAACTTCGTCACTTTCCAAATTCATCCTCATGTCGTCTCAATCCCCTGAGACCTTCGTTCATCTTTGGAGCACAGGATAAGATATTTAAATTGAAATCCTGGAGCTCTCTGACCCTCCATAAACAGCACTTGTCCTTAATTTAAGGTCGGTTCAAAGTTCAGAAAAGGAACCAAAAACATTGTCAGGAACATGTAGTTACACATGTTCCATGCACTTACTATAGTAATTACAATGAATTATGCATAATTCAACATTCTAACCCCTTATAGTAAGTCCATGTAATTGATTAAAATTACTCAGTAGTTAAATGATTAGTTAGACTGTAACCACGTCATCTTAAAATGAAGACAAATTGTTGGAAAATTCTGTCATTATTACTCATGTCGTGCCAATCCCGAGACCTTCGTTCATCTTTGAAACACATTTTAAGATATTATAGATGAAATCTAGGAGCTCTTTGACCCTCAATAAACAGCAACGGTCCTGAGATGTTTAAAGTCCAGAAAGGGAACCAAAACATTGTCAAAACATTTGGTGCGACTTCATTGGTTCAACTGTAATCACATGAAGCTTTAAAAACACTTTTGTCATTTATCAGACACTAATGTCCAAAGTGACTTATGGGGCGTTCACACCAAACACGGCTTGCTTGAAGAAATTGTTCTATTCATGCGTAAATAGATGCGTGAACATTTTGAGTTTACTCTCTTCATTGGCGGATTAAATTAGATTTATTTGCGCGTCTAATTCACTTCACAATAGATGTGAATTTGCGTCATGGGGCTTCTGTCTGCCCGGTGACATTAGCTTTGTTGATAAATGGCTAACATGGATCTTATTGAGAGAGTAGCTGTGCTTTATGTGCTTTAGGAAGGCTGAAAAACAATGTAGATTCATTCGGCCCTGTGTCTGAATCCACTAGATCTTTTCAGATGTTCAGACAGCTCTGTAAAGTTCATCAACTCCTCCAGAATCTATAGCTGGATGATGGAAGCTTTCAGCAGTGCTTCAGGCTTGTTCGAGCCTAGTTAGATGAGCTGTTGTTCGGTGTTGGCAGTAAATAGATGCGTGAAAAGATGTGTGAACATTTTGAGTTTACTCTTTTCATTGGCTGATTAAATCAGATTCATTTGCACATCAAATTCACTTCACAATAGATGGAGATTTGCGTCATGGGGCTTCTGTCTGCCCGGTGACTCTTGCATTGTTGCTAAATGGCTAACATGGATCTTATCGAGAGAGTAGCTGTGCTTTATGTTCTCTAGGAAGGCTGAAAAACAGTGTAGATTCGTTCGGCGCCGTGTCTGGGTCCTCTAGATCCTTTCAAATGATCACACAGCTCTGTAAGTTCATCAACTCCTACAGAAACTATAGCTGGAATGATGGAAGCTTTCAGCGGTGCTTCAGTCTGAGCAAAGCTCAGCTAGATGAGCTGTTGTCTGGTGTTGGCAGCAGGATTTCCCCTTGGGACACAAACAACAGGTGCTAAATCACAATCACACCTATACTAGGGCAAGCTCCTGATTGGGTAATGCGGCGCTGATATCCAGTTTTTCTGAAGTTCTGATTTTCCAACTCAAGCGATTCGCGCGTCAAACATGCAAAACAAACAATTTACGTTGCCTCTTTCATATAAATTGCCTCATTTGCACGAATAGCACGGGAGGATGTCTATTTGCGTCTTTGCATTGACTTAATATGTAAGTCACTCGTGCTTGGTACTTCCTTCACATCTGGTGTGAACGCAGCATTAGAATTATGGATTCATTCAGCGATAAATGTGTAAATGTTATTTCTACAGGTGGTTTGTCAAGCCCACTCACCTGTGTGAAGCACACTCAGAATCGCATGATGTTTTGAGGTTGTCATGTGGTGTGGAAGGAAGAGAAGAGACATTGTTTACCAATTTCTTCTGCATCAGATCAGTATGTGCATTTACTATGGGCAATATGATCCTTGCCTGTTGCACTTCAGATTATTAATGGCAATACATTGTACCATTTGTGCCTTTAAAATAGGTCTCATCTCAGTTATAGAATTAAAGTTGGCAGACAGCATTGGTTTTTGACTCCCCACCTGCAATCCCTGCTGAACCAGAGACTCAAACACGCACTACAAGTCCGCCTTTCTTACCATTAGGCCATGACTGCCCCATAAACTTGAGGGTTACGGGTTTATTTTGTTGTTGTTGTTCATTTTGATGTTAACAAGTAATATTTTCCATGCATAGTTAACAGAACTGTGCTTGTGTAGTGTCAACTGGGGCTGTAAAATGTATCTGTGGTCAGTGCCAGAATCCGGCACGTGTCTGAACAAGATCGTTTCCCTTCTTCTTGACCGTTCTGCCATTCTCTCTTTAGGCCCGATCTGCTCTGACTAAATAGGCTCCATGTGTCTGGCTCTGTAGGAGAGAACAGAATCACGCTTTTTGTCACACAGCCATGTTTTCAGTTTTGGAAGGTGTCGTAATATTACTGATTACTTGATTATGTTGTTCTGATAATGCTTAAGATAATTATCTTTTATATAACTCTTGGAAACTCCTGGTTCTGTTGAAAATCCTTAGCATTTAGCAAACATTTTTAAAGTGGCGTTTTAAAATACATGGTTGATTATACACTTACCGGCCATTTTATTAGGTACACCTTACTAGTACCAAGTTGGACCCCCTTTTGTTTTAAGAATTGCCTTAATCCTTTGAGGCATAGATTCAACAAGATACTGGAAATATTCCTCTGAGATTTTGGTCCATATTGGCATGATAGCATCATGTGTTGCTGTAGATTTATCAGCTTAACATCCATGATGCAAATCTCCCGGTAAAATGTTACTATGGAACAGCAGAACTTTACTGGGGGCGAAAACTAGCTCTCTGAGTCTAGCTCTTTGGGTAGCGGTCAAATTCAGAAATTCTTTTAGTCTCATGCATTCACATGATCCAAATTCGCAGGTCAGAGTTCACTAATCTTAAACTTTCAATCACAGCGACATCCAAACCAGTTGCACAAGCTTGCTTTTCCGGCTGATGCATTTACATGTGCATGAATGGAAGTCAATAGTGTGAAAAGTACAGTGTGACCGCAGCTTAATACAACCAATAATTACTTGCATTGGGCTCTTAGCAAACAATGCACCATTTTTGCAACTCATGGTTTATATCCTCTCTTCCTCTTTCATTTTTCTCTTTCATTGTTTCTGTAG
Seq C2 exon
GTGGTTTCCCTCACACAGGTGCTCAGTGATCCTTTCTACAGGACTCTAGAGGGCTTTCAGGTGCTGTTGGAGAAAGAGTGGCTCTCTTTCGGCCACAAATTCAGCCAGCGTGGCAACCTGAACCCCAACAGCCAGGGCAGCGGCTTCACTCCCATCTTCCTCCAATTTCTTGACTGTGTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059460:ENSDART00000082664:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(6.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]