GgaINT0058210 @ galGal4
Intron Retention
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8637018-8638528:+
Coord C1 exon
chr5:8637018-8637119
Coord A exon
chr5:8637120-8638342
Coord C2 exon
chr5:8638343-8638528
Length
1223 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TATCCTTTTTTGTGATCTAGGTA
3' ss Score
10.56
Exon sequences
Seq C1 exon
CTTCACAGGATAATGCAGTTGGGTGTGATCATCTCTGAGCTCCTAGAGAATGGTTCTTCTGTTATGGTCTGCTTGGAAGATGGCTGGGATATTACTGCACAA
Seq A exon
GTAAGCTGCTATTAAAAACTTGAAATAATTAAATAGTAAGAAAAACACTAGGCAAGACTTTTTTATATGTAAGACTGATAATTTGATGTAAGATTAATAAAACTGTTGTGGCAGCAGAGAAGAGACTGGAATACATAAAATTTTGTGTTTACAATTTACTCCACAGAATTGTTCATTAAAATGTTTCAAAGGCCCTAATGGACTTAGAATTCTAAGGCTTATCTACAAGATCTGAGTTTCTGTACTTGATCATATCAAGAATGAAAGCCGAAAGCTGTCAGTATAGATTTTTTACCTTTTTAAACACGGTATACTTTAACACAGAAGGGAAGGAGAGGAATTCCTTCTTTGCTATTTGCTTTCCAGAAATGGAGTACATACAGAGAGAAAACTAACTTTGTGCCAAAGTGACAGTAATACACCTGTTGTAAGAACAGATTACTGGAACAGATAGCTTTGTGAAACATGCTATGAATTACACAATTGATGCCTCACTTAATGTGCACTGTGTTCATGTAATTGCTTCATAATCCAGAAGATAAACATAGATATCAATAATTCTAGTAAATAAAAGCATCGTGTACAGCCAGCATCCTGATCTCAGATAAATGGTATTGTAAGAGAATGTAGTAATCTTGGAATCATTGTCAAACAGTGAAGAGAAGAGAAAGGCACATACATAGCTGGAGGTGGGAGATGTCTGTGCTGCATTTTAAAATCTCCAGAGATGCTGTCTAGAAGAACAGGCTGAAATAGTCCGGTGAGGATCATAGCATGGCAACACTGCAAAAGCTGTAGAGTCATCCTCAGGACCAGTTCTTTAATTCTTTCTTTGCTGAGGTAGCCAGTGCTATTTTATAAATGGTATTTTATTAATTATTATTATTTTCTATTGTTTATTTTATTAATCAAAGTGGTTTTATTTCATATGGAATTCAAAATTGTTAAGCATTTTCGTGACTTCTGAATTCTGTAGTTGCACAGGTTTGACTTTAATGATTATCATTAAGACCCAATTTAATACTGCTCTTTCATGTGAGATCATATTTGCATTGTGTTATAAAAATATGTAACCTACCTGGTAAACTACTTGTAATTGAATTTCTATGTAGGCTTTTGTTTCTTTGAACTAGAAGCAGATGATTGAATATGTAAGTTACATAAAGTGGTTTTATTTTAACTTCTGTCATTCTTAACATGATATATCCTTTTTTGTGATCTAG
Seq C2 exon
GTAGTATCTCTGGTACAGTTACTCAGCGATCCCTTCTATAGAACACTTGAAGGCTTCCGAATGCTGGTGGAAAAAGAATGGCTCTCTTTTGGTCATAAATTCAGTCAGCGAAGTAATTTGACTCTAAATTGTCAGGGTAGTGGATTTGCACCTATTTTCTTACAGTTCTTAGACTGTGTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716:ENSGALT00000009170:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(7.1=100)
A:
NA
C2:
PF066029=Myotub-related=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGGATAATGCAGTTGGGTG
R:
CTGATGCACACAGTCTAAGAACTGT
Band lengths:
286-1509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]