RnoINT0130936 @ rn6
Intron Retention
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174970502-174971441:-
Coord C1 exon
chr1:174971340-174971441
Coord A exon
chr1:174970688-174971339
Coord C2 exon
chr1:174970502-174970687
Length
652 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAAG
5' ss Score
2.69
3' ss Seq
TCCATCTGCTCTTACCCTAGGTG
3' ss Score
10.32
Exon sequences
Seq C1 exon
CTTCACAGGATAATGCAGCTGGCTGTGGTTGTGTCAGAAGTACTTGAGAACGGGTCTTCAGTTTGGGTGTGTTTAGAAGAAGGCTGGGATATCACTACACAA
Seq A exon
GTAAAGTGTTACACATATTTTTCAATATTTTATATTTGTATTTCAATGTAGTTTTTACCTTCAGGGTTTAATTCAATGACTAATATGTTTATGGACAGAGAAAGGCCCCCTGCTAACCAGCCCCTGCAAGCCATCCAACAGCACTGCCCTTATAGAGATCTGGGTCACTGTCAGACCTTCCACTTCTTCAGGTGTACCAGGCAGGCTTGCAGCTAGAGCCCTTGACCAATAGAAGGAAACATAGACTTTCCTTCCTGGCTTTTCCCATCCTTTTTCTAGTTTTCTCTAAGCCCATGTTTACTCCAGAGTGAAAAAGAAAATTTGTGTTAATGTCAGCAACATTAAGACATTAACCTACCAAAGAGTAGGATATGTTTGACCTGATTGTCTGATATCATAATCAACAAACTAGCCAGTTAAGTATTGAAAGCTTAATTCTATGAAAGAAAACTTGATGTACCAAAAGTGAATTTGGGGCTTTGTTTTTACTGAAAAGTTTTTAAAATACATTGGATTGGCCATCTTGAAGCAGCGAGTCAGCACGTTTGCCCTTCAGGTAACATTGCTTGTGAATTAGCTGTCGCCAAGAGGAAGTGCAACAGGACTATTTTAGGTCTGAAATTAATGAGGTGTCCATCTGCTCTTACCCTAG
Seq C2 exon
GTGACATCCCTAGTCCAGCTACTCAGTGATCCCTTCTACAGGACAATAGAAGGCTTCCGGATGTTGGTTGAAAAAGAATGGCTCTCTTTTGGTCATAAGTTCAGCCAGCGCAGCAGCCTGGCCCTTAACTCTCAGGGCAGTGGTTTTGCTCCCATCTTCTTGCAGTTCTTAGACTGCGTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812:ENSRNOT00000013126:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(7.2=100)
A:
NA
C2:
PF066029=Myotub-related=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGGATAATGCAGCTGGC
R:
CTGGTGCACGCAGTCTAAGAA
Band lengths:
286-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]