DreINT0131096 @ danRer10
Intron Retention
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48849497-48851181:+
Coord C1 exon
chr17:48849497-48849673
Coord A exon
chr17:48849674-48851101
Coord C2 exon
chr17:48851102-48851181
Length
1428 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTCATTTGCTTGTGTTGCAGAAG
3' ss Score
7.82
Exon sequences
Seq C1 exon
TTGCAGCAGCTGGTTCAGAGCCTGCAGATGCAGCAGCAGAAGCCTCAGCCCTCTCTGCTGCAGGCGCTGGATGCTGGTTTGGTGGTGCAGCTTCAGGCTTTGACTGCACAACTCACTGCAGCTGCAACAGCCAACAAACTCAACCCACTGGAACAGAGAGTTTCCTCCTTCAACAAG
Seq A exon
GTGAGGCATTTTAGGATTTTACTGGATAGAATAATATTTAAACCTGCTGTATGTTCGTTTTTGGGTCTTCTAATGCTACGTTCACACCCGACGCCGAACGCGCGTCAAGCGCGAGTGATTTACATGTTAAGTCGATGCAAATGCGCGAATAGACAACCTGCGGTGCGATACGCGCGAATGATGCATCGCGAATTGCACGAATTGAGGGTTTTGCGCATTTGACGCGATTAATGCATGTTTCGCACAAATCGCTCGAGTTCGAAAATCTGAACTTCAGCGGACATTCGCGCCGCGTTAACCAATCAGGAGCTTGCTCTTGTGGGGGCTTGACTGTGATGTATCGCCTGTCGTTGGTGTCCCGGGGGAAATCCTCCAGCCGACACCGACAAGAAGTTCATCAAACTGTACTGGGCTCAGTCAGAAGCACCGCTGAAAGCCTCCATCCAGGTTCAGTTTCTGGAGTTTATGAGCTCACAGAGCTGGATGCACCTCTGAAAGAATCTAGTGGACTCAGACGCGGCCCTAAACGTATCGACACTGTTTTTCAGCCTTCATAAAGCACATTAACACTGTTATTATCTTCATAAAATCTATGTTAGCCATTTAGCAACGAAGCTAGAGTCACCGGGCAGACTGAAGCCCTGCCCATCACGTGAATCCACTTCTGTTCTGAACTGAATTTGACGCTTGAATGAAGCAGATTTGACGCGTGAATGAAGTGAGTAAACTGAAATGTTCACGCGGCTATTTACACGCCAATAGTGCGATTTATCCACGCGTCTGGTGTGAACAGCATAATGTTTGAGGATATTTAAGAAACATGCTAAGTGAAGATACTCGTTTACCTGAGAAGCAATGCTAAAGTCAGTTATTCTCTTTTTAAAAAGGAGCGCTCTGTGTCGAAATGTCTGTTCTTGTTTTGGTCTCTATAACCAGCCCACTACCAGTTTACCCAACTATATTTCAGCACTCTGGGCTGCCTTGAAAAACATTAAATTTCATTTCAGTCTCAAAGGCTTAATGTATGCGGCTAAAAGCACATAATCAGTACCTCAGAGGATCATTGTCATAGTTTGTGTTTATTGATGTTTCTAAAATAAATTATAAAACATTATATATGTAATAATAATATATAGATGATAATAAAATCTAAAAATAATGTCACATTGTTGTGTATAATTACATTGACATTGTATATGCTTGATAGTAAGACACGCTCGCCACTGTGGGTGTCATTAACCTTTTTGGGCCAGGAAGTAGGGCCAGGCGATAAACAAACTCTCCAGTGTTTTGAATTTGGACTGCAATACCTATTTCAATCACTAGGTGTCAATCCTGAGTACTGTACTTTTAATCCTTGCATATCGCTGTTTGTTGTGTAATTGAGCTCCTTCCTCTGATCTTATTGGTCATTTGCTTGTGTTGCAG
Seq C2 exon
AAGCTGCTGGGTCAGTTTGATTTCGGGAATGAGTCTGAACACAGCGAGGATTCGAAGAAAGATTCTGCGTCCTCTCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056:ENSDART00000161898:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGCAGCTGGTTCAGAG
R:
TCTGAGAGGACGCAGAATCTT
Band lengths:
256-1684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]