GgaINT0081289 @ galGal3
Intron Retention
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52236443-52242212:+
Coord C1 exon
chr3:52236443-52236619
Coord A exon
chr3:52236620-52242132
Coord C2 exon
chr3:52242133-52242212
Length
5513 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CTTACTTTGTTTTCTCCTAGAAG
3' ss Score
8.34
Exon sequences
Seq C1 exon
CTTCAGCAGTTGATACAAACGCTGCAGATACAGCAGCAGAAACCTCAGCCTTCACTACTTCAAGCCCTGGATGCTGGTCTTGTCGTTCAGTTACAGGCCCTAACTGCACAACTTACAGCTGCAGCTGCTGCTGCCAATACACTTAATCCGTTGGAACAGAGTGTCTCTTTTAATAAG
Seq A exon
GTAGAAGTAGAATAATAGAAATTTTTATTGTTAAAATACATCTAAGTAAGAAAGTCATCTGTTGGATTTCACTCTATGGCTTTAGAGATATTAAAAATACATAAATATATGATAGTGCTCTATCTTGAAAATTAAAAAATGTCTGGGGAGAGTAGTATAAATGAAAATACACAGTTTTGAATGAGTTTAAGGCTAAATGGCATTTATATGAAGATGATTTTGATTTGAAAAAGTTAAGACATTGTTCTGTGTTTTTCTCCCCCCTTTGAAGCACAGTGGTGAGGAGAATTGAGCATGTGTTGTGTTCTTCCCTTCCTGTATTGATGACCAAATGCATGAAATGATTTACTGCAGAGCAGTGAAAGAGAAACATATAAAAATGTATATACCTAGTTTTCCAAGAAGAGTAAAAGGATATTGTGTTTGTAATTTTCTTATATTATAAAGGCCAAGAAACCTTCTCACTCACAAAGTGAGAGTGAGTTAAGGAATAATAATTCCAAATCAAATAATTAAAATAGTTAAAGCTAGTCATGGGACATTTTTTAAAGGATATGAAAATGCAGAAACAAACAGAACCTTTAAGTGTTGAAAGTTGTGTGTGCTGCTGTATATGTGTCTCTTAAATATACTTAGGAAAAAAAAAGATACAGGAATTTATGAAAAAAAAATAATAGAGTTGAATGCCAGGGTGCAATAACCATGCTGGCAATTGCTGAAGGTAGTAGTAGTAGTTAGCATTGCATCATAGTAGTAGATCAATAGAATTTAAAACAAAACAAAACAAAAGCAACAAAAAAACTTATCACAGATTAAAGCAATAATAATCTTATTCCAATATCTTTGGAAGAAACAACTTGTAATTATAGAATCTTGGTAGGATTGTCCTAGAATGAATAAATTTTAAGAGGAAGGAAGTCAGAGAACTAAAGTAATATTTTTTTGCTAATCCTCATAAGCTCTTTTTCAGGTAGTTAGTTAGGTAGTTACTACTTATACTGAAGTAGTAGTATATGTTTTACTAGTGTATTGAGGCTTTACTGAAAGGTTGTTCAGACCTCTTTGCAGATACAGCATATACTCTTACACTGTTTCCTCTTTTTTATAATCTTGGAGTTAAAATACCTATTTTCTCTTTATGTTCTTCTGAGGCTTAAGAATTTCTGAATCTAGGTATTATGGCCAAGTATATTAGTCTGTATGTATTAACAGGCCATGTTATTTTTGTAGTGATTCATTTTTGGAATATTTTATTTTCCTTTTTTGAATAGTTTCTGAACACTGATACCACTTGCAACCCAAATCCTGCTTCCTGATAGCTGAAAGGCATGAATCATAATGATATCATTCTATTTATTAGACTTTCATTTCATTATATAATTAATTGTATATTTTTTCTGTTGGACATAACAACCTTAGTAAAGTGTTAAAAAGGCTGTGTTTACTTCTATAGGTAGTGTCTACATCAGTGTTTTAGTTTGAATCAGGATCATAGTTTTTTCTTTGGTTCATACTGCAGACCAGTCTTGGCTGCATCAACTAGATTCATTTATATTATGCTAAATTAAAAGGTGTTCTGTAGCTGCTGATTATTTAGTCCACAGGGCCAGTGCAGTGGCTTCAAAGATGATTGTAACAAAAACTATAAAAACAGGAGTTGTTAGGACAAAGAAAAAGCCTAAATAGTCGGTGAAAGTACTGTTAGAGATACCTCTCTGACACTTTTTTTGTTTTGACACTTGTACAATGAACAGCAATGCTAGATTATTAACATCTTTTGAGTATAGGTCTTATAGTTGCTTAATGTCTGGGGCTCTAGTCTTTGTAAGAAAGTAAGTTATTAACAAATATACTTGTAACAACAGGAATTAGTCAAATGAACCTTGTTACAACAGCAAATAGAACTTCAGTAAATGAAAATTGTTGATAATTCTGTGTCAAAAGAAAATGAACAAGAACCAGTTAATATACATACATTGACTTCTCAAAAAGCCTACTGTAACAGTCCTTCATAAAGAGACTGAAAAGAAGGTAAATAAGTTGATCAATTAAAATATGTGGTGGGAGATACGAATTCCGTAGTAAGATATATAGAGCAAGGAGACAGAAAAATCTGTTGTCTCAGATCTGTTGTACAAAGACAGAAGGACTTTAAGAAATCTGATGTGTATGAGGCAGCAGATGGTCAAAGTTGATCACCTCTGTCTAGCATCACAGAATTAGAGAATGGTTAAGGTCCAAAGGGATTTTTGGAGGTCTTCTGGTCCATCCCCTGCTCAAGCAGAACCACTCAGATCAGAGCGTCCAGGACCACATCCAGACAGGTTTTGAAGATCTCCAAGGAAGCAACTGCACCGCCTCGTGGGGCAACCTGTACCAGTTGGTCTGTGGCCTATACTGTACATGTTCTGGTTTGTGACCAGTTGTCTCTTGTTCACCTACTGGGCACCCACCTACATTTGGAAAGAACAAACTGAACAAGTGGTGCACCTTTTTGGTCTTCATAATAGTTGAAAATATAATCAGAAATTCTCTTTAGTGCTCAGCAAGAGTTGTACCTTCTAGTAGGTACTTAAAAAAAAGAAAAAATAGAGATTAGAGGAGGTCCCTAGCAACTGGAAAAGGGCAAATGTTGCATTCTTCTTCAAAGAGGGCTAAAAGATCACCCAAGGAAACTACAAGCTGGTCAACTTCACTTAGCTCTGTGGAGCTAGTACTTCTGAAAGACAGTTCTGGGTGTGCTAAAGACAAGGTGATTGGAAACAGCCAGCATTGATTTACCAAGGGCTAATCATGCCTGACTAACCTGGTTTCCTCATGTGATGAAATGACTGCGCTTAAGGATGAGAGGAGAATAGTGAATACCATTTACCCTGATGTAACACAGTATTTGACATCATCTCACAGAATGCTTTGTGTGGAACTGAATATATTATAATCTCCGTAGGTGGACATCCAGATTGATAAAACAATTATTTGCATAATTGGGCTCAAGTAGCAATTAATTGGCTGTACTTTACCTGTAGGTCAGTAACAAGTTGTCTTCTTAGTGATAAGCCTACAGAAATTTACTCAGGGATGTTGTCCTGTATAGCATCTCTTGTAATGAACCTGAGGTGTATGAGCAAAAGATTAGTGGAAATGATCAATCCACCTTTATTCAGCAGTCACGAGACACACATCTGGAGTCCAGTTTTGGCCCTTTGCCTGTACAAGAAGGGCACTGACAATCTGGGGTGAGTTTAGTGGAGGACCACCAAGTTGGGCAAGTGCTCTAGCCGTAACCTCTGAGGCATCAGGCTGAGTCAGTCTGGGACAAAGACAGCTTCAGGGGAGAGCATACACCAGCCCATCAGCACTCAGAGGAAACTGAGCAAGAAGACAATTGGCTGACTGGCAGATCTCAGAGGGTTGTGATCAATGGTGCAGTCTAGTTGGAGGCATGTGTTCCCCAGGGATCAGTGACGAGTCTGGTCATGTTCAATATCTTCATCAGTGACCTGGATGATGGGTTAGAGTCCACCCTTAGCAAGTTTGATGATGATACAAAGCTGTGAGGAGTGGCTGACGCACCAGAAGGCTGTGCTACCATCCAACAAGACCTGGACAGACTGGAGAGCTGGGCAGAGAGGAACCTGATGAGGTTCAGAAAGGACAAGTGTGGGGTCTTGCACCAGGGGAGGAATAACCACATGCATCAGTTCAGGTTAGGGGCAGACCTGCTGGAGAGGAGCTCTGCAGAGAGAGACCTGGGTATCGTGGTGGACAGCAGGTTGACCATGATCCAGCAGTATGCCCTTGTGGCAAAGAAGGCTGGTGGCATCCTAGGGTGCATTAAAAAGGGTGTGGCCAGCAGGTTGAGGGAGGTGATCCTCCCTGTCTACTGCTTCAGAAGAATTTCGTTTCCCTTGCAATGAAAAGTTTTTTTTCATATCTTTTAAAATTCCCATTGCTTTTTCTGAATGTATTCTTAAGTAGTTAGATCAATAGGTGTGGCATTCATAAAAGCTCTGGTTTTATATGTGTTTATGTGTAGCGAATTGATCCTAGGTAGCCTAATATTTAGTATACTTAAATGTCTATCAGCTTTTGTAAAGACAATTCTGCTCCAACTTAACAATATTTAAATTCAAAAATTTCCCTTTAATATCTACTATTTTATATTTACTAACGACAAATTTAATCAGAAATCATGCTACATGTTTGCTTCTTTTGGCTGGAATTTCTTTGATTTTGGCTTTTGGCAGTATAAAACTTCTTTTTATCATCAGTTGTTGAATTCATTGTCTGAGATTATTTGTATTTAAGTTGTACATGCTCTGTTATTTTCCGTTCTACTTTGTTGTGGTGGAATGTGTATGATGATTAATTATATTTTAAAGAGAAGCTTGGGTGCTTCTTAAAAATGCATATTTTGTTCAGATGCAGCATTTCACATGTTTTCAGTGAGTATATTCTAAGAAAGTAAAGCAATTTAAGAAGAAGACAACCAGCTTGCTTTAAATGGATGGGATATGTATGGTGCAAGTAACTCAGGATTTTCACATCTCACCCATAAGCTCTCTCAATTTCTTTACTGAGAGAGTGGAACTGCCTTCCTAGGGAATCACAGAATCATAGATTCGCTAAGGGCGAAAAAGACCCACAGGATCACCCAGTCCAACCATTCGCCCATCACCAATGGTTCTCACTAAACCATGTCCCTCAACACGACGTCCAAACGTTCTTAAACACCTCCAGGGTCAGTGACTCCACCACCTCTCTGGGCAGTCCATTCCAGTGCCTGACCACCCTTTCAGAGAGGTTGTAATTCCTAACCTCCAGCCTTCTCTGGCACAGCTTGAAGCCATTCGCTCTAGTCCTAACTAGAGAAAGGGCAAGTGTAGAGTTACATTATGTTACATGCCTCTAACTAGGGAAACTGTTTCCCCAGTCCTGTCAGTGTTCAACTGGTGTTTGGGCCATGCCCTCACCTGTTTTCTCTTAGAGACAGTCCTACTTTCATTTCTATTAGATTATTTCACTGGGAAAATAATTCTAAAAATTCTTGGTTGGTCAGAGTCTCTTAATCAACTTGTGCTTTATTCTTCATGGACTCCTGTGACTGGAAATACATGATCTTCTCATGATATGAGCAGAGTAGTTTGTTGATTGCCAGTGGATTGGATAGTTGGCTTCTTTGTGGTAACTTATTTTAAGTAAAGGTACCATCACATAAAATTAATCTCTTTGTAAGCCTTTCTCCAAAATAGCTGTTATTTACTATGGGAAGAACATGTGGTTCTGCTTGAGACAGCAGGCAGAGCTCAAGAAAGCCACAGCTGAGACTTGGGATTTGATGCATTCAGAAATTTGGTAGTGACACTCGTATGGCATTCACTTTTCAAGTGATTACCAAAGTATTTTTTTAAATTGAGAAACAAGAACATTTTTCTTTTGAAAACTAAATATGCATAAAATATGTATGTTATGAGGAGTACTCATTCAGTAAAGCTTACTTTGTTTTCTCCTAG
Seq C2 exon
AAGCTGATGGACAGGTTTGACTTTGGGGAAGAATCTGAACAAAATGAAGAGCCTAAAAAGGAAACTCCCACTTCCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635:ENSGALT00000022182:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]