DreINT0131775 @ danRer10
Intron Retention
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28325937-28328187:-
Coord C1 exon
chr7:28328071-28328187
Coord A exon
chr7:28326060-28328070
Coord C2 exon
chr7:28325937-28326059
Length
2011 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
GGTCCTTCTCTGTCTCTCAGACA
3' ss Score
8.6
Exon sequences
Seq C1 exon
AGACGTGTGCGGTGAATAATGGAGGCTGTGACAGCACTTGTAAGGACACATCCACTGGTGTTCGCTGCAGCTGCCCGGTGGGATTTACTCTGCAGCCTGATGGCAAATCCTGCAAAG
Seq A exon
GTTTGAATCAGCATTTCTATCACAATGTTGCCGTACACACATTTTTTAATAAGTTTCTTTTAGGTAAAAGCTCATAAAAATATGTTGAAGTCACATTGCACATTTAAAATAAAAAAGTTTAGAAATTGCCGAAATCAATTAAAAGTTCGGGCTAAGATTTTATTTCTTTATTTATTTCTTTATTTATTTATTCATACATTTATTCATTCATTCATCATTTATTTATTCAATCATTCATTCATTCATCATTTATTTATTTATTTGTCTATAGTGCAAATGTGCACTATATATAATTTATTTTTGTTTTTAAATATTTCCCAAATTATGTTAAATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGGGGAAAGTCTTATTTGTTTTATTTTGGCTCGAAAAAAAGCAGTTTTAAATTTTTTAAATGCCATTTTAACAATTAGCCAAAATGGACAATATATTTTTTCAATAGTCTAAAGAACAAACCATTGTTATACAATAACTTTCCTGATTACCCATATCTGCCAATTAACCTAATTAAGCTAGTTAACCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGCAAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATGAGCAGAGCCAGACGGAATCTGCGGACGTTTTTTGCTATTTCTGCAGAGAATTTTGGTAAAAATCTGCTGATTTCTGCGGAATTATTTTGGGAGTATTATAACTAAAACCTTAATATATGAAATAAAAAGTAATAAATTACTGAATAAAAACTGAATAAATTCAGATTTACACATTTACTCAAGTAAATAACAGAAATAATGATGGGCTGAAAATCTGCAGAAATCTGTGGAATCCTGCGGAAAATCTGCGGAATTCTGCGCGCAGATTCCGTGTGGGCCTAGAAATGAGTTATTAAAACTATTATGTTTAGAAATGTGTTGAAAAAATCCTCTCTCCATTAAACCGAAATTGGGGGGAAAAATAAGCGGGGCTAATAATGCAGGGGGGCTAATAATTCTGACTTCAATAAATATATTTAATATATTTATATAATAAATAATATATAATAAATAATATATATTTTTTCTTTATATATATATATATGAAACGGATTTATTACATACATGGATGTTATATTAATTCAGAGAAAATAAAGCAATGTTTTACTGTTGCATAAATATATAAAATAGTTTTTAAACATGCATGCTCAAATAATTACCGATTTTTCAACATAAAAGCACCATATCCACTCTGCTTGCTTTCAAAGATGTGTGTAGGCATTTAACTGCATTGCTTGATGTGCTAAAAAGCTTTTCAGAGTGCAGGCACACAAAGGCATTTCTTCATTTATTATTATTGCTCATTTATTGCAACCCATTGAGATATGTAAATTGCCATATGCATGTTTGTGGTATTTCAACAATTTTGATATACTGCACAGCCCTAATTCCAATCAATTATGAATGATCAAGTAACTCCAAACATTACCTTAAAATAAATGAATAAATTACCCAACACCAAATATCTGGGCTGTGAAATTGCTGAGAGGCTAGTAACATTGAAAAACCACTAGTTGGGGTGGTTAAAAAGAGTTACTGCCAAGCCCTGTAAACACCTTATAATGTTTTTTTTTGCTTAACTGTCATTTTAATGTCACAAGTAAAGGTCACGCTTTATTTCAATGTATAATTCACACTATTAGCAAACCGTTAAATAAGGCTTTTAGCTCAATAAAGTACTAATTAGCTGCTTATTAATAGTTAGTAAGGTAGGATTAGGAATGTAAAATGACAATTAATACTTTTTAAGTGCTAATGAACAGTTAATATCTGTATAATAAGCCAGTAGTAATTGGTGTGAATTGTTCCTTAACTTAAAGTGTTACCCAAATAACATTCTGGAAAGGTTTAACCCTACAGCTGATTAGTTCATCTATGTTCTGTAGTGTGATTTGGTCCTTCTCTGTCTCTCAG
Seq C2 exon
ACATAGATGAGTGTGAGCTCCACAATGGCGGCTGTGACCACTACTGCAGGAACACCATTGGCAGCTTCGAATGTAGCTGTCGGAAAGGCTTCAAGCTGCTGACGGACGAGCGTTCATGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362:ENSDART00000054366:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]