HsaINT0146214 @ hg38
Intron Retention
Gene
ENSG00000175356 | SCUBE2
Description
signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr11:9059303-9060524:-
Coord C1 exon
chr11:9060408-9060524
Coord A exon
chr11:9059426-9060407
Coord C2 exon
chr11:9059303-9059425
Length
982 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
CCAATGCTTTCCTGTTGCAGATA
3' ss Score
9.97
Exon sequences
Seq C1 exon
AAACGTGTGCTGTCAACAATGGAGGCTGTGACCGCACCTGTAAGGATACTTCGACAGGTGTCCACTGCAGTTGTCCTGTTGGATTCACTCTCCAGTTGGATGGGAAGACATGTAAAG
Seq A exon
GTAGCCTTCACCTCCCCAGGGAGACTGGGTGCCCTGTTATGGAGGGAGGGCCCATGCCGCTAACATATGGGGATAAAGGCAACATACCCTCCATACCCCACGTGACTCGAGATTTGCTTATGATTCATATCAATGGGAGCTTTTTCCCCCTGGGCTAGTGGAAGGTTATAACTGAGTAAGCTTAATTAGAACCAACACTTAATTACACTAATTGTTGAGGAGGTCAGCCTCTACAAGCATCAAATAATTCATTTCAGACAGTGGCCTTATTAGAAAAAGGCAGTTAAAGGAAGCATTCATTTGCAGGAGATAATATCAACATATCATACATAATAGCCTAGAGATTATTATATAAATAACAGTCAAGATGATTATCCAGAGGACTTAATGAATAACTGTACCATTAACTTTTACTGATGAAGAGCGACCCCAATGACTTGCTCATATTTCATGGGCAAGAGTACAAAGGATTAGCCCTTTAGCATGATAAAAAGTAGATAACCAATTGCCAGACGAAACTGGGAAAAGATAAGATTGAGTATCAGGAATCATTTTAAAACATTGAGGCTATTTGATCATTGTGTAATTTGCCAAAACAAATGCTCTAGTCCTTTATAGCTTTAATCATTAAACTTGAATACATAGTGTACTAAAGAGACCCATCTTACCTTGAGAGAGCAATACAAAGATGAGAATATAACAGGACGTCATCATTCTTTCCCAGAGTTTGTTTCCTTAATGCCAATCAAGGGCATCATAAGTCAGCGTTCTCAAGACGATGAAACACTTGTCTTTCAAAACTGGTTAAGCCAGATAAGAAAACATGTATAAGGTTAAAAACATCAGCAAACATTCTTAAATGCTTTTGTGAGTCTTTTTCTTAATTTCAGAGACTAATGAACACACACAATGGCCCTTCAGGGAGTTGTGGGAAATGAGGCAAGTATTGCTCTCTGATATGCCCAATGCTTTCCTGTTGCAG
Seq C2 exon
ATATTGATGAGTGCCAGACCCGCAATGGAGGTTGTGATCATTTCTGCAAAAACATCGTGGGCAGTTTTGACTGCGGCTGCAAGAAAGGATTTAAATTATTAACAGATGAGAAGTCTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175356:ENST00000520467:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=90.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTGCTGTCAACAATGGA
R:
CTTGGCAAGACTTCTCATCTGT
Band lengths:
238-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development