DreINT0133395 @ danRer10
Intron Retention
Gene
ENSDARG00000031495 | seta
Description
SET translocation (myeloid leukemia-associated) A [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
Coordinates
chr8:2529730-2530097:-
Coord C1 exon
chr8:2529984-2530097
Coord A exon
chr8:2529901-2529983
Coord C2 exon
chr8:2529730-2529900
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAAGTGTGT
5' ss Score
2.99
3' ss Seq
TGAAACTTTTTTATTTATAGGAT
3' ss Score
9.24
Exon sequences
Seq C1 exon
TATTTCGATGAAAACATGTATTTCGAGAACAAAGTCCTCTCCAAAGAAATCCACCTGAACGAAAGCGGAGACCCAACCTCAAAGTCAACAGAGATCAAATGGAAACCGGGAAAA
Seq A exon
GTGTGTACTGTTTGTTTTTATAGAGTTCTCAGACTGAGATTTGTACAGTTCTGAATATAATACTGAAACTTTTTTATTTATAG
Seq C2 exon
GATCTCACAAGCCGGTCCAGTCAGACACAGAGTAAAGCAGGCAAGAAAAGACAACATGAAGAGCCAGAGAGTTTCTTCACCTGGTTCACGGATCATGCTGATTCAGGGGCCGATGAACTGGGAGAAGTCATTAAAGACGACATCTGGCCTAATCCGCTACAGTACTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031495:ENSDART00000049109:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.553 A=NA C2=0.904
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(18.9=100)
A:
NA
C2:
PF0095613=NAP=FE(28.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCACCTGAACGAAAGCGG
R:
CCCCTGAATCAGCATGATCCG
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]