DreINT0136741 @ danRer10
Intron Retention
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23782273-23783036:+
Coord C1 exon
chr8:23782273-23782374
Coord A exon
chr8:23782375-23782909
Coord C2 exon
chr8:23782910-23783036
Length
535 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
TCTTCTTTCGCTGTGTGTAGTAA
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTCTAGAGAAACTACACAAGCGTGCAAAAATGGAAGATCATCCTCCATTCGGCTGCGATGTGATCCCAGTGTTACAGTGAAAAACTATATTTCTCCACCAAG
Seq A exon
GTACAATGAAAAAATAGCTTTTTTTTTTTAAAGTTGTGATATAGATTGAATTGCAAAGTGTGTGATTTAATTATGTGAATATGTGCTTTAAAAAAAAAAGTGTAGCACTGTGCTCTTTTATACAAAAAAAAGTAGTGTTATGAGCTTTTACAATTTTTAAACGCTGCTAATTTAGCAGCATAATTCTACACATAAATACTCATTTTCTATAGTAATAAAATATACTGAAAATAGTAAAAAACTTCACTAAAAATGCACTGAAATCTTAATAAAATTTAAAACTAATTGCAAATTTGCACAGAAATAAAACAGAAAAATATAACCACTATATATTTTTAATGATTATTTTATCTAATTAAATGCATTTTTTATTTCTAAATTGTGCAGCCTTATTTTTTTTTTTTTCAATTAAGACTGTTATAAAGTCTGTGATGTTTTGGACTGAACTTTAATGTTAGCTTAACTTTTTAATCCAACTTGGAAACAGCAGAGATGAAGTTTTTTTTAATTTTATTTCTTCTTTCGCTGTGTGTAG
Seq C2 exon
TAACTGCTCAGAGGGCACATGTGACGGCTGCTCTTTCCACTTCCTGTGGCGCTCACAGCAGGCCTGTCCTCTCTGCTCAGAAAGTAACTATAAGGAGATTGTCAGCGCCTGCATCCAGGGAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899:ENSDART00000137820:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF053256=DUF730=PU(45.9=97.1)
A:
NA
C2:
PF053256=DUF730=PD(52.7=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGAGAAACTACACAAGCGT
R:
CTGAATTCCCTGGATGCAGGC
Band lengths:
229-764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]