GgaINT0113151 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8115946-8117837:+
Coord C1 exon
chr1:8115946-8116047
Coord A exon
chr1:8116048-8117710
Coord C2 exon
chr1:8117711-8117837
Length
1663 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ATGCTTTGGTCTCCTCCTAGCTC
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTCTTCAACAGCAACAACCTCTTGTGAAGATGGTCGTGCAACTGTTGTGACAATGAGATGCAACCCCAACAAGCCAGATCAAGGAGAGCTTTCTGTGCCCAG
Seq A exon
GTATTTAAGTGTTTGTGTCCCAGTAGTGCCTGGAAGCTCTTTTTCCACAGGAAACCTTTAGAAAACTCAGTAGGAAGTTTATACTTAACAGCAAAGAGAAGTGCTGTTCTCCCTCACTTAACTTGCTAGGAAGTCTCACTCATTTCTCCTCCAGAGCTGTCAATGCCCATCTGGACATCACTATAAATATATTGATCGTACATACCCTCACTCATTCTCCTTTACAAAAGCTAACGTTGTGAGATGTGTGGGATTCAGTTTTGGGACAGGTTATCCATGCCCACATGAACAAAGCCAAAGAGGCAGCTGCTTCACACATGACAGCTGAGTGACTGATGTTTGAATGCCTTTGGAGATGTTTACCCAGTTTCTTAGGGCCTTGACACTCTGCAAATTATGCTTGGCAACAAGTTACCATCTATCAAATGCTGTGTGAATCTCCTTCAGGTGTGAGTCCTTGCTTTCTAGCATTTCGGGTTTAACACAATGTGAGTTGTGATAACTCACCAGCAGTGAGAGGAGTAAACAATTCTGCTTTTTAACAGTGTGAGCATAGACAGAAACATCACACAACTGACGCTGACACGACGTACCTTATCTCATTTCCTGTTGACATTTCCCTTCCTCGCCCCACTTTGATTAACTCAGCAGTCAGACAGCTATTTTCAAATAAGTCGTGAGGTACCTGATAAATGTCAAGTAGAATTGCATGTAACTCTTTGATCTCCCAGACACAGCATTTAGTATCACATGAAGTTGCAGTGCAAGGTGAAAGATATAAAAGAGGAGAAAGATCTGTCAGTGGTCTTATCATGTATGGCAAAAAGTATTACATTATCCAGGGACGATAGTTATCAGTTATTCAAATTAAGGTAAGCCAGAATTGGCTTTTAGTTCTCTGGACTTTTCAGTCCTTTGGATCAGAATAACGTATTCCTGGATGGTAAAACAGAAACATTTACATCAATTTTTCTGCATGGGTATACATCACAATTACACAGCCCAACTTCTTGCATGGACTGTTTGTCACTACTGCTGTTAGAACTGCTGCATTTGTCAGGAGGAAAAGCTGCACGAATGCCCTAGCATTGCCAGTACAACTTTGTTCTGCCGATTGAATGCATAATAAACTCATTAGTCTCTCTTAGACGAAGTAAAACTGTTATCTCTTCATTAACTGGTGAACATCTTCCCAGTAATTAACTGTGACAGGACAGGTCCATTCCATATGGACGACATCACCCAGGCATCATTTTAACAAGAACAGGAACCAACTTGTGGCATTCATGGGAAACAGTCACCCAGTTCAGGAGAATAGTGAGAGAGGCACACGCCAGTGTAGCTTGTGCTGGTGAAACGTTAGAGTAGTTCTGCTGCCCCAGGGCTTACTTCTTTTCTTCATTGTAAGTGCATAGGTAGCACACACTGCCAGGAACTGAGCTGTTTTTTTAGACCTTTGGCAGCCCAATATCTGTTGTTTTTTGAAAGGGTATTATTTAAACTGGGAAAAATTCTTCCCCCAGATTTCTCCACCTGCTGACTTGATAGATGTTTACCTGTTTGTTGTATTTACTGTTACCAATCTTCAGCAGTAGAATGTAGAGTGAAGATGCAAACTCCAGAGTGTTTCATAAATGATAACTATGCTTTGGTCTCCTCCTAG
Seq C2 exon
CTCATGCCCTGCTGGCACCTGCGATGGGTGCACTTTCTACTTTGTGTGGGAAAGTGCAGAAGCTTGCCCTCTGTGCACAGAGCAAGACTACCATGAGATCGAGGGAGCCTGCAAAAAAGGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGCAACAACCTCTTGTGA
R:
TTTTTGCAGGCTCCCTCGATC
Band lengths:
215-1878
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]