GgaINT0113151 @ galGal4
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7508173-7510063:+
Coord C1 exon
chr1:7508173-7508274
Coord A exon
chr1:7508275-7509936
Coord C2 exon
chr1:7509937-7510063
Length
1662 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ATGCTTTGGTCTCCTCCTAGCTC
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTCTTCAACAGCAACAACCTCTTGTGAAGATGGTCGTGCAACTGTTGTGATAATGAGATGCAACCCCAACAAGCCAGATCAAGGAGAGCTTTCTGTGCCCAG
Seq A exon
GTATTTAAGTGTTTGTGTCCCAGTAGTGCCTGGAAGCTCTTTTTCCACAGGAAACCTTTAGAAAACTCAGTAGGAAGTTTATACTTAACAGCAAAGAGAAGTGCTGTTCTCCCTCACTTAACTTGCTAGGAAGTCTCACTCATTTCTCCTCCAGAGCTGTCAATGCCCATCTGGACATCACTATAAATATATTGATCGTACATACCCTCACTCATTCTCCTTTACAAAAGCTAACGTTGTGAGATGTGTGGGATTCAGTTTTGGGACAGGTTATCCATGCCCACATGAACAAAGCCAAAGAGGCAGCTGCTTCACACATGACAGCTGAGTGACTGATGTTTGAATGCCTTTGGAGATGTTTACCCAGTTTCTTAGGGCCTTGACACTCTGCAAATTATGCTTGGCAACAAGTTACCATCTATCAAATGCTGTGTGAATCTCCTTCAGGTGTGAGTCCTTGCTTTCTAGCATTTCGGGTTTAACACAATGTGAGTTGTGATAACTCACCAGCAGTGAGAGGAGTAAACAATTCTGCTTTTTAACAGTGTGAGCATAGACAGAAACATCACACAACTGACGCTGACACGACGTACCTTATCTCATTTCCTGTTGACATTTCCCTTCCTCGCCCCACTTTGATTAACTCAGCAGTCAGACAGCTATTTTCAAATAAGTCGTGAGGTACCTGATAAATGTCAAGTAGAATTGCATGTAACTCTTTGATCTCCCAGACACAGCATTTAGTATCACATGAAGTTGCAGTGCAAGGTGAAAGATATAAAAGAGGAGAAAGATCTGTCAGTGGTCTTATCATGTATGGCAAAAAGTATTACATTATCCAGGGACGATAGTTATCAGTTATTCAAATTAAGGTAAGCCAGAATTGGCTTTTAGTTCTCTGGACTTTTCAGTCCTTTGGATCAGAATAACGTATTCCTGGATGGTAAAACAGAAACATTTACATCAATTTTTCTGCATGGGTATACATCACAATTACACAGCCCAACTTCTTGCATGGACTGTTTGTCACTACTGCTGTTAGAACTGCTGCATTTGTCAGGAGGAAAAGCTGCACGAATGCCCTAGCATTGCCAGTACAACTTTGTTCTGCCGATTGAATGCATAATAAACTCATTAGTCTCTCTTAGACGAAGTAAAACTGTTATCTCTTCATTAACTGGTGAACATCTTCCCAGTAATTAACTGTGACAGAACAGGTCCATTCCATATGGACGACATCACCCAGGCATCATTTTAACAAGAACAGGAACCAACTTGTGGCATTCATGGGAAACAGTCACCCAGTTCAGGAGAATAGTGAGAGAGGCACACGCCAGTGTAGCTTGTGCTGGTGAAACGTTAGAGTAGTTCTGCTGCCCCAGGGCTTACTTCTTTTCTTCATTGTAAGTGCATAGGTAGCACACACTGCCAGGAACTGAGCTGTTTTTTTAGACCTTTGGCAGCCCAATATCTGTTGTTTTTTGGAAGGGTATTATTTAAACTGGGAAAAATTCTTCCCCCAGATTTCTCCACCTGCTGACTTGATAGATGTTTACCTGTTTGTTGTACTTACTGTTACCAATCTCAGCAGTAGAATGTAGAGTGAAGATGCAAACTCCAGAGTGTTTCATAAATGATAACTATGCTTTGGTCTCCTCCTAG
Seq C2 exon
CTCATGCCCTGCTGGCACCTGCGATGGGTGCACTTTCTACTTTGTGTGGGAAAGTGCAGAAGCTTGCCCTTTGTGCACAGAGCAAGACTACCATGAGATCGAGGGAGCCTGCAAAAAAGGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAGCAACAACCTCTTGTGA
R:
TTTTTGCAGGCTCCCTCGATC
Band lengths:
215-1877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]