DreINT0138648 @ danRer10
Intron Retention
Gene
ENSDARG00000042213 | si:ch211-233h19.2
Description
si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
Coordinates
chr18:8988084-8989370:+
Coord C1 exon
chr18:8988084-8988185
Coord A exon
chr18:8988186-8989243
Coord C2 exon
chr18:8989244-8989370
Length
1058 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
TCTCTGTCTGTGTCTGTCAGTGC
3' ss Score
8.66
Exon sequences
Seq C1 exon
ATCTCCACAGGTCACAGCCTCGTGTCAGAGAGGCAGAAATGCAGTGGTCTCGCTGCGCTGTAACCCAGAGAAAACTGAGAGGGGAGAGATATCTGTGCCCAG
Seq A exon
GTACACACACATATACAAACACACACAACCACACAAACAAACACTGCTGTTAATGCAGTCTAAATGTGGCACAGGGCATCCCATCATGTCATATCAAATCACTTGATACCATGATGTAGAGTTGATTTTAATTAATTTCATTCATTCATTTTTATTCGACTTAGTCACTTATTTATCAGAGCGCCACAGCGGAATGAACCACCAACTTCTCCAGCATAAATTTTACACAGCGATTGCCCTTCCAGTCACAACCCAGGACTGGGAAACACTCACTCTCGCACTCATACACCACAGCCAATTTGTTTTACCTAATTACCTGTAGCGCATGTCTTTGGACTGAGAGGGAAACTCGTGCGAACACAGGGAGGACATGCAAACTCCACAAAAAATGCAAACTGACCCAACTAGGACTTGAAACGGCAATCTTCTTGCTGTGAGGCAACTGTACCAACCACTGAGCCACTGTGCCACCACATTTTAACCGGCTAATAATTAAATTGAATAAACTTTGCACTTTAATTCAAGTTTACTGCAAAATATTGGTTTCTTGTGTTATAGTATTTATTTAAATAATATTATTGTATTATATATTAAAATATTAAACTGAATAAATAAATTAATTAAAAAGAATAAAGGCAAAAAACAACCATACCTTAAATTAAAATTAATGCAAAAATAAAATGAGAATAAAATACAAGTAATTTTACAATTTTACAAATAAACAACATGTGTCAGTCATTTATTTCTTTTTTAATTTTTGTAATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAAAAGATGAAATCATTTAATATGCCTCAACAGTTTTATCATCTGAATTCTTTCAAAACATTTGCTTTGAATCTCCTTTTCTAGCCAGTGTCTGCAGTCTGCTGTGCTCTGGCTGTGTTTTAGTTTCTCTGTCTGTGTCTGTCAG
Seq C2 exon
TGCGTGTCCTGCAGGCACCTGCGACGGCTGTACGTTTCTCTTTCTGTGGGAAAGCTCCAGTGTGTGTCCACGCTGTACTGAGGCTGACTACCACGCCATTGAGGGAGCCTGTAAAGCTGGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042213:ENSDART00000145226:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCACAGGTCACAGCCTC
R:
GCACTCCAGCTTTACAGGCTC
Band lengths:
227-1285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]