HsaINT0086687 @ hg19
Intron Retention
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:29618]
Coordinates
chr1:109741195-109742602:+
Coord C1 exon
chr1:109741195-109741296
Coord A exon
chr1:109741297-109742475
Coord C2 exon
chr1:109742476-109742602
Length
1179 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TCTCTTTTCTGCTTTGCTAGAAC
3' ss Score
6.97
Exon sequences
Seq C1 exon
GTCCAATGATGTGACCCAGTCCTGCAGTTCTGGGAGATCAACCACCATCCGCGTCAGGTGCAGTCCACAGAAAACTGTCCCTGGAAGTTTGCTGCTGCCAGG
Seq A exon
GTAAGCCCTGCAAAGGGATGTAACAAAGGCCAAAATCTCCCTTGAAGTCATTCCATCCTGAGATCCAGAGATTACTGAAAAAGAGCAAAAAAGAAAAGAGTTTGAGATCCATTAATGGGTGCTTAGGGGCACAGTCATGGCCCCAGACCCTCAGTCTTCATATGGCAAGAATGGGGTAGAAGGAAGAGTGAAAGCTATTCTCATATTCCTGGTCCATTAAGGCAGCAGCTGCGTAGCATGGTAACCAACAGCTCGGCTGAGAGCCAGGTTGAATCATCTCCTCCACTAACCAGCTATGTTATCATGGATGCATTTCTTACCTTCTTTAGGCCTCTTTTTTCCATATCTGTAAAAATGGGCATAATGCTAAATTCCCTCAGCGGGTTGTTTTGAGGATTAAATGAGACAAGGAGACTTTAGGACGTTTCATGATCTCTGGCTATTATGAGGATTAGTAAAGGTTTAGGGATCCTAGGAATCTCTCTGCAACGAAAATACCCAGTTCTGAGGTTAATAGCTGAGTGAACTAAATCAAAAATTTCTAAATGAATATGACCACAGGACACCCCCTCCCCTCCCCGCATAACAGCAGCTAACATCTTGACGGGCACTAGCGTCTTGAGGAAGACGTTTTGGATATGCTGCGCCTAAACTGACTGGGGAGATGGGGAGCAAAGCAGGGCGTCTTGACCCAGTAGTGGTGTCTGAGTGTCAAATCCCTGTTCTTGCCATTGTAAACATCACAGTAAAGTACATAACAGGTATCCATACCGGAAGTTCATTCCTGAACCCCACCTCAACTCCAATCCCACCCCGAGGAAGCTGCATCAAAGTGGCTATTGCAAAATGTCACAAGTCTGTGGGGAGGACAGGAACCTCAAAGGGGTTGATGAGACAGCCATGCTGGAGCTCAGACACCTTACAATAGCTCTCATAAGATGTCAGCAAAAACATAAACGGGCAGAGGGTGGGGAGCCCACTGGAGGCCAGGAAGGCCTCTTATCAGTGAAATCAGAGATCAAAACCTGTGTTAAGGACTAGTTGGAAGGATCCTGGTAGGGCTAATGGTTTGGGCAGGGAGAGGGTAAATCAGGCAAGCTATGAGACAACAGGCTTCCAACCAGATCTTCCCCACCCCTCCAGCGAGTGAGAGCTCAGGTCTCTTTTCTGCTTTGCTAG
Seq C2 exon
AACGTGCTCGGATGGGACCTGTGATGGCTGCAACTTCCACTTCCTGTGGGAGAGCGCGGCTGCTTGCCCGCTCTGCTCAGTGGCTGACTACCATGCTATCGTCAGCAGCTGTGTGGCTGGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299-KIAA1324:NM_020775:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGTGACCCAGTCCTGCA
R:
CTGGATCCCAGCCACACAG
Band lengths:
224-1403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)