DreINT0137911 @ danRer10
Intron Retention
Gene
ENSDARG00000093780 | si:ch211-212c13.6
Description
si:ch211-212c13.6 [Source:ZFIN;Acc:ZDB-GENE-131119-8]
Coordinates
chr15:21024337-21024704:-
Coord C1 exon
chr15:21024492-21024704
Coord A exon
chr15:21024414-21024491
Coord C2 exon
chr15:21024337-21024413
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
GTTCTGTGACTCTCTCCTAGATG
3' ss Score
7.81
Exon sequences
Seq C1 exon
GACACAGTGGTGGCTCTTCAGGCTCTGTCTTTGTACGCCACCAAAGTGTTCAGCTCTGACGGCTCCAGCACAGTGACTGTACAGTCAGCAGGAGACTCTCACCACTTTGATGTCAATCAGGACAACAAGTTACTGTACCAGGAGAAGCAGCTGGCCAATGTGCCGGGCAAATACAGCATTGAAGTCAAGGGCTCAGCCTGTGTGTCTGTGCAG
Seq A exon
GTCTGTGAAGTGCAGCAAAATTTAAAACACGGGTGACTGCTTTACAAGATGTTCTAATGTTCTGTGACTCTCTCCTAG
Seq C2 exon
ATGTCTCTTTTCTACAATATCCCTACTCCAAAGAAATCTAATAAATTAGAATTCTCTGTTAAGACTGAGGGAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093780:ENSDART00000137386:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGCAGGAGACTCTCACC
R:
AGATTTCTTTGGAGTAGGGATATTGT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]