HsaINT0135683 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9152824-9153343:-
Coord C1 exon
chr12:9153125-9153343
Coord A exon
chr12:9152952-9153124
Coord C2 exon
chr12:9152824-9152951
Length
173 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GTGTCTTTGCTGTTTCACAGACA
3' ss Score
9.72
Exon sequences
Seq C1 exon
GACACAGTGGTGGCTCTCCATGCCCTGTCCAGGTATGGAGCAGCCACTTTCACCAGAACTGAGAAAACTGCACAGGTCACCGTTCAGGATTCACAGACCTTTTCTACAAATTTCCAAGTAGACAACAACAACCTCCTATTACTGCAGCAGATCTCATTGCCAGAGCTCCCTGGAGAATATGTCATAACAGTAACTGGGGAAAGATGTGTGTATCTTCAG
Seq A exon
GTAGGGCTCCAAGCTTATATGGGTGAGAGTCAACTTTAAACTTGCCAATTGAAATGGAAACTCTGTTCCTTCCTTCCTGGGAAAGTAAAAGGCACCTCTGGAGACGTTAAGTAATGAGGAAGTGAGGGGTCCAGAAAAAGAGAGAAACTGATAGTGTCTTTGCTGTTTCACAG
Seq C2 exon
ACATCCATGAAATACAATATTCTTCCAGAGAAAGAGGACTCCCCATTTGCTTTAAAAGTGCAGACTGTGCCCCAAACTTGCGATGGACACAAAGCCCACACCAGCTTTCAGATCTCACTGACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.1=17.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGCACAGGTCACCGTT
R:
TGTGTCCATCGCAAGTTTGGG
Band lengths:
247-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development