DreINT0138740 @ danRer10
Intron Retention
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47845365-47847947:-
Coord C1 exon
chr16:47847834-47847947
Coord A exon
chr16:47845461-47847833
Coord C2 exon
chr16:47845365-47845460
Length
2373 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCAAATTTCTCATTTCATAGGAG
3' ss Score
7.58
Exon sequences
Seq C1 exon
TTCTCTTTGGCCAGTTTATGTTCTTCCAGACGACCTCTAATGATGTGGTGGAGATCTTTGACGGGGCGTCCACCGAGTCTGCGCTCCTCTCCTCCACTTACGGCTCACACTCAG
Seq A exon
GTAAAAGGCTTTGTTTACCGCCGCCGTGTGAGACCAACTAAAGGCCCGTCTGCAGAGATGACATTAAACTGCATGTTGGACTGGCTCAGTCAGAGCTCATTCCCAAATTGCTTCCACTGCGTTGATAGCCGTGTTGTTGTTAATGTGCTTCTGACATGCAGTCGGGGTCCACAACTCTAAGACCACAGTGAAAATTGGGGATTTGTTGTTTTGACATTTAAACCTGAGAGAAATTGTTGTGAAAGTATTTCAGATTTTGCAGGCCCCTGGATATGGAAGGCCATCAGTGCCAAAAGATGTTTTGGCCCGCCTCACGTTTATTACATCACACCAGTTTGTTCTCAAGTACATCACTATGGAAAGCAATTGGGGCCAAAAAGCTAACACTTTAGTTGAAGAGTGAATATGAATGAGATTTAAAGAAGAAATGAAGCAGTCAGTCAAGTTACCATTATTTTGTACATTGGTTTCGACTTTAATGTAACTATATATAACAAACTCGATTAATGTAACCATTTAGAAGAAAATGGCATGTTTTACTATAGATTTTAGACCTAGGGTGCAGTCATCTTGGAATATCGCTGTGTCTCAAGTCACAGGGTTGGTTCTCTTCCCTCAGCTGAACAGATACAGTGGAAGTAATGGACTAAACATGGAGACTGTAAAGACTAATTTAACCCAATGAGTGAAGTTGTGGGCATGGAGCTGCTGCAAATATAAGCATCTTTTTGCCTGGGAATACCTCCTGGGTAGTATTTAGCGGTCTCCAGAAATGTATATAGGGGTACGTTTTCAGAATGAGCCTGGGTTGGAATGTTTAAGGTTCTTCAAAGAATCATTGATGTGAACCTTAATTTTTAAAAGGGTTGATTTTTAAATACATCTCTGTATAAATATATTGGGTTGATATCACATTCAATTTCAATACAATGCTGGTAGCTGGCACCCTCTGACTTCCATAGTATTTTTTTTTTCCCAAAATGGAAGTCATTAGCTATGTTTCCATCAACTGTTTTTATATGTCCGTTTTGCATATGCGCATAAAAAATGGTTGATGGAAAAGCCATAACTGAGTAGGATAAACTTTTTATCCAATAAGAAAAAATGTGCATAAACTAGGATGGAAATACTTCACCAAACAAATTCCAGTATATGCATTAAACAAAAGGTCATGTGGTTTTGTTATGAGAGATCATGTGATGATAAAAATGTGTGTAAATGGACAAACCAGGCTGAGCACATTGTAAAACATCTGAAATTTTACTATGGTCACTCTAAAACGCCTGAGCCATTTTAGTATTATTATTATTTTATTATTGACCCCCAGAATCAAAAGCTTCTGTGCTTCATGTCTCACACCTTCAAACTTCTGAGGCACAAGTAATTTATTAAATAAAGAAAGATTCATGCAGCTTCTCCTACCACAGTAAATTCCATTTTTACTTTTGATATTTATAGCCGGGTGAGGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGGTCGCTGGTTCGAACCTCGGCTCAGTTGTCGTTTCTCTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCTACAGTCCAAAGACATGCGGTGCGGTACAGGTGAATTGGGTAGGCTAAATTGTCCGTAGTATGTGTGTGTGGATATTTCCCAGAGATGGGTTGCGGCTGGAAGGGAGTGTGTAAAAACTTGCTAGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTGATAAAGGGGCTAAGCCGACAAGAAAATTAATATTTGTAGCCAGTTAATCATGAAGTGACGATTTTGTTTTCTTTGATTTATTGGTTGGAAATGCTGCTTTATTCGCATGTCTTTGATGCCATATTCCAGTTTTGAGCATGACTTTAATTCACATCTTTGGATGGAAACCTAGCTAATGTGTGCCAACATCCAGCATTCTACTAAATATCTTCTTTTGTGTTCAACAAAAGAAAGAAACTTATAAAGGTTTAAAACCACATTAGGGGGAGTAAATGATGAGGAAATTGACATTTTTGTGTGAACTAACCCTTTAACAATTAACAATTTATGCTGATGCTGAACAGAATCTAATTAATACTTAAACCTATTATATTAAAACAGAAAAGGATGCAAAATACAAATCTTTGCTGGTAGTCTCTGAGGTTTGGAGCTCTATTGTTGGCGTACTGAAGACCCATCATTTCCTTTAACCCCGTTGATGTGGCAGTGCTCAGCAGTCGTATTGATGATCTCATTTATAGCGTAGTTGCAGCTGCAGAGATAACAGAACTGTTTTTCTTTTCTTCACCTCCTCAAATTTCTCATTTCATAG
Seq C2 exon
GAGAGCCGTTGCCGCTGAGCTCTGCCAATGAAATCACCATCAGGTTCAAAACAGAAGGACCCAACACAGCTAAAGGCTTTCATTTTGTGTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905:ENSDART00000148564:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(35.8=100)
A:
NA
C2:
PF0043115=CUB=PD(28.3=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]