RnoINT0006381 @ rn6
Intron Retention
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86870609-86871306:-
Coord C1 exon
chr7:86871193-86871306
Coord A exon
chr7:86870705-86871192
Coord C2 exon
chr7:86870609-86870704
Length
488 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
GTGTTTGTTTTGTTGAGTAGGAG
3' ss Score
4.92
Exon sequences
Seq C1 exon
TGGTGTTTGGCCAGTTTGTATTTTTCCAGACATCACTCCACGATGTTGTTGAGGTGTTTGATGGGCCAACTCAGCAGTCTCCTCTGTTATCTTCCCTCTCGGGATCCCATTCAG
Seq A exon
GTATCCTTTACTAGAACTGCCATTCATCAGCTATTGCTTAAAGACTGACTTTTGATTAGTATTTTGGAGAGAGTTGAGATCTATGTCATCCATGTTAGCAATACCATTAAACTGAAAAACTTATAAATTAAGGATAAAACCACAGTTTAATAGTAATTAATACGCTTGAGAGAAATTGATTAATTTTCTAGGGTTGTAATAAAATAAATACAATACTTAATCACAATCTGTGCTGTTTCATATGATATAAAATATTTAAGAATGAGACATGTATTAAAATGTAATTGAAGCTTTCTGGTTAAAGAAAAAAAAAAAGATTGCGATTGAAGACGAACCCAAGGAAAATATATTGCTAGCAGTAGGATATTTTAAAGTAATTTGATAGAACCTAGTTTGACCTTTCAAATGACAGTGTAAAATGATATAGATTGTTAGGTTTACTGAATGAAGATTATTTATGATATCTGAGTGTTTGTTTTGTTGAGTAG
Seq C2 exon
GAGAGTCACTTCCACTGAGTTCAGGTAATCAGATCACAATTCGATTCACTTCAGTTGGACCCATAACAGCTAAGGGATTTCACTTTGTTTATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937:ENSRNOT00000093026:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGTTTGGCCAGTTTGTAT
R:
TGATAAACAAAGTGAAATCCCTTAGC
Band lengths:
208-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]