DreINT0138741 @ danRer10
Intron Retention
Gene
ENSDARG00000077905 | si:ch211-236p22.1
Description
si:ch211-236p22.1 [Source:ZFIN;Acc:ZDB-GENE-050419-118]
Coordinates
chr16:47843461-47845460:-
Coord C1 exon
chr16:47845365-47845460
Coord A exon
chr16:47843661-47845364
Coord C2 exon
chr16:47843461-47843660
Length
1704 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTTATTTTTTGTTTGTGCAGCTG
3' ss Score
8.93
Exon sequences
Seq C1 exon
GAGAGCCGTTGCCGCTGAGCTCTGCCAATGAAATCACCATCAGGTTCAAAACAGAAGGACCCAACACAGCTAAAGGCTTTCATTTTGTGTACCAAG
Seq A exon
GTATGCACTTCTCTGTATCTGTAGTAAGCTTCATTTAAGACTGTGTTGGAAAATGTTTCATGCTACGAATTTTTGCAGTACGTGCCAAGGCTGCATTTATTTGATCAAAACTGCTATATTGTCAGTTATTCTTACAATATAAAATGGATGTTTATTTTATCTCTATATTTGTATTTTATTCCTGTAATTCCATGCTATTTTTTTTGCATAATTAATTCAGTCCTTAGCGTCATGTAATGCAGTGTGTGCCAAGGCTGCATTTATTTGATCAAAACGCCTTACAACTGCAATATTGTCAGTTATTCTTACAATGAATAGGTTTTTATTATTATTATTTGGATACATATACTTTATTCCTGTAATGCCGTGCTGAATTTTTAGCATAACTAATTCAGTTTTGGTGTCATATAGTGCAGTATGTACCAAGACTGCATTTATTCGATCAAAACTATATTAAAAACTGCAATATTGTTACAAATCTCCTATTCTTACAATATAAATGTGTTGTTGTTTTTTTAATTCATTTTAAAATGTAATTTCATTCTATAATGCCATTCTGAATATTGTCAATTATTCTTAGAATATGCAATAGATGTTTTTATTATTATTATTTGGATACATGCAATTTATTCATGTAATGTCATGCTAAATGTTTAGCATAATTAATTAAATTAATTATTTATGCTAATAAATAAATACATTAATTACTTAATTAATGTCTAATTCTTTAGAAATAATTTTTATATGGCCACTTGCTCTTCAATAAACATTTTTATTATTAATATTGCAAACAGTTACAGTATATTTTGATTATATTTTTTTATGCAAATGATTTGGTCTTGTGTAACATTATAAATATAGTTATTGTATCATATGATAAATACAATGCTGAATATACCTATTACTTATTTTTCATAGGCTAGTATATGTTTGTTATGTAGTTTTAGTGTTTAATTCTTGCATTTTTGCAGCTGTTTAAAATTCCCTATATGTAAAATGTACAACATGCTTACAGTTAAAGGAATAGTTATTATCGCTTTTTTAAAATTTTTAATAGTCTTCAAATATTCCCCCTGTGTTGATTAATAGAAAGAAGCATATTTTCAAACATAATAGTTGTAATCACTAATTTCTAGTAAATATTTTTTTAGTAATATTTTTTTTTTTTCAACAAAAAATACTTAGACTTCTTGTAGATCAATTGGAAAAGTGGCAGAGGGTAGATTTTTCTGATGGATCATCTGTTGATCTGCATCCCAATCATCACAAATACTGCAATACTGCAGAAATCAGTCACGATTATTTTGGTAAAATAAGCGTAATCTAGAGGCATTTGCCCTTTATATCAGCCACTTCTGATACAAAATGATCAACTAGAAGTCAAGTTTTTACTTGCTGTTCCTAAATCCTGGACTTTTGTCAGGTAGTGTGTGTTACACTAAAACACTTTTTTTTAGCTGCTTCTTCAAAGTAAATATTTAAAATAAGCTATAATGATACAATTCTTGAGTTTTTTTAGGACAACCTAATTGTTTTAGGTTAAATCCTTTTAAATTTGTTAAAACAAGTATGTCAACTTAATCATTTTTATGTTGGGACAACGTAAAGGAATTGTGTGGAACCTAGCATTTATTTATTTTTTATTGTGCAGCCATAATTTGCATGGTGTTTTGAAGTTTACTTTTTTATTTTTTGTTTGTGCAG
Seq C2 exon
CTGTTCCGAGGACCAGTGCCTCTCAGTGCAGCTCTGTACCCGAGCCTCGCTACGGGAAGCGCATTGGGAATGACTTTGGATTGGGAACGGTTGTGCTTTTCGAGTGTAACCCAGGTTATACTCTCCATGGTGCCAGTGCCATCAGGTGTGAGGCAGTGCCCAACTCACTCGCCCAGTGGAACGGCACTGTGCCAGCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077905:ENSDART00000148564:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(28.3=90.9)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCCGTTGCCGCTGA
R:
GCACAGTGCCGTTCCACT
Band lengths:
288-1992
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]