RnoINT0006382 @ rn6
Intron Retention
Gene
ENSRNOG00000004937 | AABR07057765.1
Description
NA
Coordinates
chr7:86868886-86870704:-
Coord C1 exon
chr7:86870609-86870704
Coord A exon
chr7:86869090-86870608
Coord C2 exon
chr7:86868886-86869089
Length
1519 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATCACCTTATTTCTATGCAGCCG
3' ss Score
7.59
Exon sequences
Seq C1 exon
GAGAGTCACTTCCACTGAGTTCAGGTAATCAGATCACAATTCGATTCACTTCAGTTGGACCCATAACAGCTAAGGGATTTCACTTTGTTTATCAAG
Seq A exon
GTAAGTGACACTATAGTCTAGAAACACAGTAAGGAATGATGTCAATTTCCATGCTTTTGCTCAGTTGTTGACCAATATTATCCTCATAACTGTATGGGAAAGAGGAAAGTTGTTTCCAGTAGTTGTATACTGATCCCTCCCCAAAAATTCTTTTTTTGGAACATTGCTGCTTTAACCAGCTTTTAAAAAGAAGGCATTGTTCCGTCGCCTTTCTCAATTTAAATGTCTGATTTTCCTTCCGTTCCAACATTTTGATGCCAAAACATTCATGTTATCTTTACTATTATTGACTCTTTTCATTTTTTGTTTTTCTCATAGTCTCATACTTTAAACATATGTATATTTGTTGTAATTTATTTATTTAAGGCAAACATTGCTCCATGTAAACAATATGCTTTCTCATTCTCTCAGTAAAATTCAACTTCTGAATAGTCACTAAATATATTGCACACTAAATATTAATTTTCTTGCTTTTTTCTTGCCTTTTATGGACAGCATTTTATGATATCATTAAACCAAATCAAGACACATTTGAGATATTTTAAATCAATTGTATATGATCATGCAATATTTCTTGTCAAATGTACTTTGCACTTTCTTACTCAGAAATGTATAAACATTTGTGACACTGTATTCTTTTAAATTCCCTCATCTCATTTTTTATCATTGGTTGTGGCTTAAACTCCTTTATTATAGTAATTTGCTCTGTAACACAACTGTGGTACTGTGCATCCTCAAAGGCACTAAGAAAACTTATATACATTTCCTCAAGTGATACCAGACGGTTTAATCTATTGGAATTTACCATGTCATTCTTTTGCACTGTTGTCAATCTCTTTAATTACATTTGTATGTGTTTTAAAAAGAAAAAACATCCTGTTATCATTCTACTTGACTAAATCCAAAAAGGCACAATTGATGGGCATACAAATTCTAAAATCAATCTCAAATTTGATTATATATGATTGACGAATTAAAAGTAAATATTGTTGTTAATCTGTCTGACTTATAGTCTGCTTAACCTGACTGTAATTACTGACTTCAATAGAAGCAAACATTATTCGATAATTAAGTTTGTAAACATGTTTGAAATAACTAATTAATAACAATAATAGCCAGTACAGAAAACAAATGGAATGTATTTAATGTGTACTAAGTTACTTTTTGTAGTTGGGAATCCAAACTTAAAAATTATACATCCATTTTTGAATCTGTAAATTACAATAGTTAAATAAAATTATTTTATTTTATTGATAAGAATTTGATGAAACAAAAGAAAAAAACAGCATAATTGATGTTATTTAAAGGATCAAAGACAAATTAAAAAATATCTTAAATGCCAGTATTCACTTGAAATTACATTTTATTTTTATCAAACAAAACTTTTAGTTGTGTTAAAATTAGTAATTCTAATGAAAAAAGAAAAACCAAAGGTTTCTTTGAACCACTTTAGGAAATTACATTTTAAAATCTATACTGTCTGATAACTACGAAATTAAATCACCTTATTTCTATGCAG
Seq C2 exon
CCGTTCCTAGAACAAGCTCTACACAGTGCAGTTCTGTGCCTGAGCCAAGATTTGGAAGAAGGATTGGCAATGACTTTGCAGTTGGTTCACTGGTCCTTTTTGAATGTAATCCAGGATACATTCTCCATGGCTCCAGAGCCATTAGGTGTGAGACCGTACCCAATTCCTTGGCGCAGTGGAATGATTCCTTACCTACTTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004937:ENSRNOT00000093026:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCACTTCCACTGAGTTCA
R:
CAATGCAAGTAGGTAAGGAATCAT
Band lengths:
299-1818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]