DreINT0140919 @ danRer10
Intron Retention
Gene
ENSDARG00000102363 | si:ch73-138e16.4
Description
si:ch73-138e16.4 [Source:ZFIN;Acc:ZDB-GENE-070705-203]
Coordinates
chr22:1275411-1278001:+
Coord C1 exon
chr22:1275411-1275520
Coord A exon
chr22:1275521-1277364
Coord C2 exon
chr22:1277365-1278001
Length
1844 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CCTTTCATCTTTGATTTCAGACT
3' ss Score
8.4
Exon sequences
Seq C1 exon
TCTACAAGTGAAGACGACCATCAGGAAGAAGTGAAATCTGAAAGACGAGATGAAGATGAGTGATCCAGAACCCTGCAGAATTAAAGAGGAGGAGGATGAGGAGCAGACAG
Seq A exon
GTTGGTGTTTATTCCTGATTCTTCAGTAATGAGGCTGATGAACAGTAACCGTACGTTCACACCGAGAGCGTCAAAGTAGCCGGAAGTCATTCATTTTCAATGAGAGCAGGCGGCGAGGAGCAGTGCGGCGCATCTTCTCTGGCGTAGGCGTCCATAGATATATACACTAGATGTCGCCTGGCCTATTGTTGTCTATTGGACGGAATGCGTCAATAGCGCCGCCATCTTGCTACAGGGTAGCGCTCCTTTAAAATGAATGCGGCACCAAGGTACAGTGGAGGACTGTGGCCATCCAAAGCCAGAGATATACACATATATCTATGATTGGGAGTTTTCCTGGATGTTAGTGTGTAATATTTTTTTCTAATTACGAAAATTATAATTTTACATCACTTTTCTACATTGATAGATCAGTGACCGCACGGGCATTCCTGACAAAAAGCTTGTGTTTGTGTGTACAGAAATGTACTATCCACCCTGCCTGTTTAATTTGATCTAATCATGTCCTGAAACACATCTCCTCTCCTGCTTTCACTGCTCATACTGACGGAGGGAGCGATTTGTTTGTGAGTGAATCCCCCGAACGACTCTTTCACTAACGTTAGGCGACAATAATACCAGTTTCTGGCAGCGCAGCATCTCGTTGTCATATTTCTTTTGCATTGTTTGCTGATTTTATTCAACAAAACTAGCATAAGCCGAGTGTTTAGTGCGAGTTGGAGCTGCTTTGCCGTATGGTGAATGCAGTAAGTGACTGTTATCATCAATAACGTGACCTGATTAGCACAAAAGTTCAGAACATACAAAAACAGAAAAAACTTAATATTACCTATGAAATGTTCTGCCTTTGTGCTTTGATTTCTTTGTTTGCTCGTTTCTACACCCGTAGACAGCGCTAAAGTCCCGCATCTTCACGTAATAACTGTCTTGACTAGTGCGGTTGAATGACATTTGTCCTGGGAGCACTGTACCAATGTGGCGGCGCTATTGACGCATGCTCAGGGTCCCTATGCGATATCTAGTGTATATGTCTATGGTGGGCGTCGAGGAGAGTTGAAATCATGTCAACTTTATGGTAATGAGCTATGAAGCGGGTCGGCGGCAAGCAATCAGAATGAAGACGTCCACCGCATAATAGGAGTTCAGAGAACACAGACCTGTGAACTTTGGTTCCGATCACAGTTGTTCCCAAGGGTTTGATGATTGCGGTCGCCGGATTTCCAATTATTTACCATGTTTTATTACAGGAACATGCTTTAAATAAGTTACTGATGTGCAATAATGTTATATAAATTAATCTTAAAAAAGCCGGAATCTCACGCGACGTGACAGTATAAAACAGTATTGCTGCTTCAGGATATTTCAGACATATGGACACATATTGGATAAATAGAGCAAAGCCACACCACACGCAACTTGATCTTCCATTGTTATATGAATTTGATAAGAGGTGCGCAACATTTTCACACTAGAAACATGTTTATGCAGGAATGTAACTGATAAGCTGCAATGGCTCCTTTAAATACGAGATTAAGTTAGCGAGTTTTGACGCTCTCGCCGCCGGAGCTGAAGGCAGACAGCATTGTCGCCAGAGCGACCTTGGACGCTCTCGCCGCTTTCGGTGTGTATGTACGGTAAGAGCTTTGAGCAGTTCATCTATTCAATTGTGCGCTAGGAAAATATATTAAATAAACACACAGAAAAATAAGTACACTATTAAAAAAAGTGTCTTTTATTCACTTCATTTTTTTGAGAATTAAATGTATATGAATGAAGTCTTTTCACTTCACATTTTGCTCAGAGTGTTTTTGACTAATAACTGAACCTTTCATCTTTGATTTCAG
Seq C2 exon
ACTTTATTGAAGAGGATGACGAGGAGACGTTTGTGAAAGCTGAGAAAATCCCTCATTTATTGACTGAAGGTGTTTTTTTAATGCAAAGAGGAGACAAGTGTTTCACCTGCACTGAGTGTGGGAAGAGTTTGAGATCCAAACAAAGTCTCCAGTTTCACATGAGGATTCACACTGGAGAGAAGCCGTACACATGCACTGAGTGTGGGAAGAGCGTCAGACAATCATCGGCACTTAAAATACACATGCGCATCCACACTGGAGAGAAACCGCACAAGTGTGATCAATGCGGCAAGACATTTTTGATTCATTCACACCTGCAGAACCATCTGAGAGTTCACACTAAAGAGAAACCGTATTCATGCTGTGAGTGTGGGAAGAGCTTTGCAACGCAGTCCAGTTTACGAAAACATCAGAAGATCCACACTGGAGTGAAAGAGCACGTGTGCTTGGAGTGTGGGAAGACTTTTATTACAGCTCAGGCTTTGAAGAAGCACCAGAGGATTCACACTGAGGAGAAACCGTACAAGTGTTCATACTGCGACAAGAGCTTCAGGCGGACAGGAGACCTGAAAGTGCATGAGAGGATCCACACTGGAGAGAAACCGTACACATGTGATCAGTGTCTGAAGAGTTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102363:ENSDART00000159296:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.099
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0041217=LIM=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2),PF079757=C1_4=WD(100=22.7),PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGATCCAGAACCCTGCA
R:
CGCATTGATCACACTTGTGCG
Band lengths:
342-2186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]