DreINT0144180 @ danRer10
Intron Retention
Gene
ENSDARG00000094603 | si:dkey-21h14.12
Description
si:dkey-21h14.12 [Source:ZFIN;Acc:ZDB-GENE-110913-1]
Coordinates
chr4:11091906-11092751:-
Coord C1 exon
chr4:11092437-11092751
Coord A exon
chr4:11092203-11092436
Coord C2 exon
chr4:11091906-11092202
Length
234 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTATTTTATTTGTTCTCCAGGAG
3' ss Score
9.2
Exon sequences
Seq C1 exon
ATTTTGAGCAGGTCAGGTTGGTTGATGGAGACAGTTCCTGCAGTGGTCGAGTGGAGGTTTATCATAGAGGTCAGTGGGGAACAGTGTGTGGTGATGACTGGGATATGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGGCTGTGGAGAACCTCTGTATGCTCTGGGTTATGCTCACTTTGGACAAGATTCAGGTCAAATCTGGATGAATGAAGTTTCATGTAGAGGATCAGAGTCAACACTGAAGAGCTGTAGTTCAGGAGGATGGGGTGATCATAGCTGTGTTCATGATAGAGATGCTGGAGTCAGATGCTCAG
Seq A exon
GTGAGCTGCTTCATATACTGTAACAGTCTGTTAATGCATCACTAATTTAATACAAAATGTTTTAAATGCCATTTGAAATAATCTGTTTGAATTAAAAGTAAATCTTGAAAATCATAAACTTACACTGACACTAAATTTCCTGTTATTTTAATTCAGGATGATTGTAGCTGATCGTCTTCTGTGTTAGAAATCTCATAAAGCACCATCATTGTTACTATTTTATTTGTTCTCCAG
Seq C2 exon
GAGTTCATCTAGTCGGAGGTTCTCGCTGCTCTGGGAGGTTGGAGATCCTTCATGATCAGACGTGGATGTCAGTGTGTGACGCTGCCTTTGACCAGCAGGATGCAGAGGTTGTATGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACGCTCAGATGTGGACACAAGAGATTCACTGCAGAGGAAATGAGTCTCATGTTGGATTATGTTCAACCACAAATGACACACAGTGCTCTCAGAAAAACAATATAGAACTGAAATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094603:ENSDART00000135511:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=96.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAACTGGGCTGTGGAGAA
R:
TCTGCATCCTGCTGGTCAAAG
Band lengths:
293-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]