DreINT0146877 @ danRer10
Intron Retention
Gene
ENSDARG00000097551 | si:dkey-7i4.15
Description
si:dkey-7i4.15 [Source:ZFIN;Acc:ZDB-GENE-131127-129]
Coordinates
chr15:804957-809061:-
Coord C1 exon
chr15:808922-809061
Coord A exon
chr15:805179-808921
Coord C2 exon
chr15:804957-805178
Length
3743 bp
Sequences
Splice sites
5' ss Seq
GGAGTCAAA
5' ss Score
-19.76
3' ss Seq
ACCTTTTCCCACTACTGTAGACC
3' ss Score
9.16
Exon sequences
Seq C1 exon
AACAGCAGATTATTATAACGATGGCGTTTATTAAAGAGGAGAGTGAAGACATCAAGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAAGCTTTCAGAGTCAAACATGAAGAGATTGAAGAAGCTTTAGGA
Seq A exon
GTCAAACATGAAGATCCTCAGGAACAAACAGGTTGGTTTTTTCATCCAGGGGCAGACTTAGTTATTTGGAGAGAGGTAAAGTTGGTTTTATATTCACTCATTCATTCATTTAGCAGTCTCTATATTGTGTACCATGTTACTTTGAATATTGGGTCGGAATTAGCATGCAATTGTGACTAATTGACTGTAAACAGTGTTGTACTTTGATAGTCATTGGCTGCTAATATGATTTCCCTGTTTAAAATTTGCAAAGAATACTTTAATGAAATTATATCATTCAGGATAATGTCTGAATATCCAATTATAAAACCAATTTTACCTCTATGTGATTTGGGGGCACATACATACATTTATACACTTTTATATATATATTATTTAAAGTATATTTTAACAGAGCTGCATGATTCTGGCTAAAATAAAAATCACAATTTTTTTGTTTTGCTTAAAATTAAGATCAGGATTTTCTCAAGATTCTATAGATGTTAATTATTAATATGATTAGCATATTATTATTGTTAATTCTCAAACATATGGTAAAACAGCAACAGGCTATGTGCAGATCTACTGTTGGGAAAAATGCTGATTTTTGTTAAGACTTAATGGTGGACTTGAACAAACTTAAAATGTATCCTGGTCATTCATGTACAGTACAGAGATTACATCAGAATGCAACTATTCATAATTCTGATGTTGAATTATTATGTTTGTAGACCTATGCCTGCAATTTGTCATTATTATTATTATTATTATTATTATTATTAGACCATTTATTCACTGGTGAAATCAGACAGTTGTCATTATCAGATTCCCTCCTGCATTATATCCAACATTACCTAGGCTAGAGTAGTTATACTGACACAGTTAAACATTCTCATGCACAACTCTTTGTGTTCGCTATGAAAGAAAAATACATCAAATGCTTGCAATCATAACTCTAAAATCCGATATGATTATTTAAATGATGCGTGTGCTTTCGGTTTCATTTTCACTGCAAAATGTGGTTCATAGTTCCCGCGCGGCTCCCAAACGATCGCTCTGTGCCACAAACTGAATGTCATTTACAAATGTATTAGCTCTTATTCACAGCCTATGCAGGTTCTGTTCATTAAAGTAGACTTAATTCACAGGCGTGCGCCCGCTCTCTTCAACTTGCCTCAACACACCTGCAAGGAAACATAAGCTTAGCTTTTATTCGCCGATAACTGAGTTTAGACAAGACTAGCGGCTAAACAGGAAGTCACAGTATTTGACATTACAGGCTGACTTTCTAATTGAGCAGGCTTTCAAGATTTGACGTGAAGGTGCAATGCACAAGAAGTGCTAATTTTACAAAAAAACTGTTAGTCGTCTTTAGGCATGGGCCTGTATAAGATTCTGACAATATGACAACCTTGCATAAACATATCACAGTTCTGTGATTATGGCTCTAAAATATATTATTTTAAATGTCTGGGTAAAAACGTACACTTTTTTCCCTTTTTGAACACAAAATATTTTATTTTGAGAGCGATTTAAAATATTTTGGAGCTGTAAATATGTCAGGCTAAATAACTCAAATGCATCATTGACTTCTGCTGTCTTCATTAGTTTCAAAAGCACTGATTTATTTACCATTTAAAAAGGAATCTTTGCAGATCTTTTCTACTGGATATACTGTTGTCCTAAAAAAACTAAACAAAGAAATGACACATGCTGTAGGATCAAATGAAGTACGGGAATCAGCCTGGTGACAGACTTTCTTAGTTCTCATCTCGTTTCTCATCTCTTATCTCATCAGCATACCAGTAGCTGTGCGTAGGTTCTTCTAATCCAGGGGTGTCCAAACTCAGTCCTGGAGGGCTGGTGTCCTGGAGAGTTTAGCTCCGACTTGCAGCAACGCACCTGCCAGGAAGTTTCTAGGGCTGTTTCTCAATATGCGTTCTTCAGCGGTCTTGCGTCCTCATGTTTTCGGCAGCGTCATCATCAGCTGCCTAAGTTCAGCTCCAATACTCAAGACCGCAAGAACAGAGGACGCGTGAAACTTCCCGGATGTGTTCTTGATATCGAGGACGCACCGATGCAGACGTGAGCACCGAACTCGCTCTGGAAGTCCCAGAAGTCATTGCGACTGGAGGTGGAAAGCGCAGCATTTAATTTAGATTTATTATAAAAGTTCAGAGATATTACTTTTTTACCTCAGGAGTTTCCCTAAATGAAACCAAACATCACCATGAACATCTTAACAAATGAATAAACACATTAAGGTTGTTTGTTTGCTGAAATTCGTATTAAAATCTGTTTTATTTATATTGTGCAGTGTATATTTATAATTATTTTATGCGGAGTATATATTTTGAAGAGGGGAAAAACAATAAATGGTTGTATGAGTGCTGTAATGTTCAAAATAATTAACCATTTAAACGCGTGAAGGTCATTTGACCATCAGGAAGAACGCAGCATCTCATTTCTCAAAGGGTGCGGTCTCTGTCCTCGCGTTCTCCTGAGTTTGTTCTTCCAAGGACAGCTGGCAAGACCGCTCTCCAGAAGAACGCAAGTCCGTTCTCTGCGTTCTTGGAATTGAGAAACAGCCTAGAATATCTAGTAAGAGCTTGATTAGCTGGTTCAGGTGTGTTTAATTAGAGTTGGAACTAAACTCTCCAGGACCAAGTTTGGACACTCCTGTTCTGATCCAGTCAGCTTGGTAATATTACCTCAAACTGTATAGAGACAAATGTGCTGTCATTGGGACCCTGCCCAATGGTCAGGAAGTACAAATAGTTAACAGGTTAATATCGCAGACAATTGGGCTGCCAGACCTCTTTCTTAAAATGTCATTGGCTGTTTCTCAATTCCAAGAATGCAGAGAACGAACTTGCGTTCTTGTGGAGACCGGTCTTGCCAGGTGTCCTTGGAAGAACGAACTCAGGAGACCGCGAGGGCAGAGAATGCGTCCTTTGAGAAATGAGATGCTGCGTTCTTCTTGATGGTCATGTGACCTTCACGCGTTTATTATGGTAAATTATTTAAACATTACAGCATTCATACACCAATTTATTGTTTCCCTCCTTTTCAAAATATATACTTTGCTTAAAAACAATATATACTTTGCACAATATAAAAAAAATGATTTTAATACGAATTTCAGCAAACAAACACCCTTAATGTGTTTGTTCCTTTATTAAGATGTCCATGGTGATGTTTAGTTTCACCGTTTCATTTAGGGAAACTCCTGAGGTAAATAAGTGATATCTCTGAACTTTAATAATAAATCTAGATAAAATGCTGCGCTTCCCACCTCCAGCCGCAATGACTTCTGGGACTTCCAGAGCGAGTTCGGTGCTCACGTCTGCATTGGTGTGTCCTCGATATCAAGATCACATCCGGGAAGTTTCATGCATCCTCCGTTCTTGCGGTCTTGAATATTGGAACTGAACTTTGACAGCTGATGATGACGTTACACGAGAACACGAGGACACAAGACCGCTGAAGAACAGCCATTGTCTTAAAAATGGAAAACAATGTGTCTAACATTTTTAGTTGTATGCTATTACATTTTAACCTAGAGTTTATACATTTGTAATTCCACAAAAAAAACTTTATGGACACATGCTTTATAGAAACTTTTACCCACAGCATAGTACAGCACAATGGATATGGTCGAAATTGAGTTCTTTTAGCAGTATAGTACTGTTTTAATTGAAATTGGTATGCTATTATCTGTTTTACACCCATGTGGTCATTTGTACCTTTTCCCACTACTGTAG
Seq C2 exon
ACCTGATGCCACTCAAAGAGGAGAGTCAAGATCAGAAAGAAATTAAAGAGAAGGATCAACAAAAGGAAATATATAAAGAAGAACCAAAACAGACGAAAACCTCTTCAGAAGGGACAACCCAGAAGACCAAAACTAATACCTGCCATCTGTGTGGAAAGAGTTTCTCCTGTAAACTAAATCTTCAAAAACACTTGAAGCTTCACACTGGAGAAAAGCCTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097551:ENSDART00000156942:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.681 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0209311=Gag_p30=PD(50.6=87.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]