HsaINT0186283 @ hg19
Intron Retention
Gene
ENSG00000170949 | ZNF160
Description
zinc finger protein 160 [Source:HGNC Symbol;Acc:12948]
Coordinates
chr19:53569867-53577521:-
Coord C1 exon
chr19:53577393-53577521
Coord A exon
chr19:53573516-53577392
Coord C2 exon
chr19:53569867-53573515
Length
3877 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGGTTCTTTATATCTTGTAGATA
3' ss Score
8.28
Exon sequences
Seq C1 exon
GACTGTGTCATTTTGATATGAATATTATCTCCATGTTGGAGGAAGGGAAAGAGCCCTGGACTGTGAAGAGCTGTGTGAAAATAGCAAGAAAACCAAGAACGCCGGAATGTGTCAAAGGCGTGGTCACAG
Seq A exon
GTAAGAGCTCAGATGGGCAGAGAGAAGGCCACTCATTAACTAGAGTGTGGGAGGGGGCACAGTAGCTCACGCCTGTAATCTCAACACTTAGGGAGGCCAAGGTGGGCAGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATTGTGAAACCCTATCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCATGGTGGCGTGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATTGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGTGGACAGAACAAAACTCCGTCTCAAAATAAATAAATAAATAAAGTGGGAAACTCTCTGCAGATGAGAGAGTTCTTTGGGAAAATAAGTTGCCTTAGAGATAGAGGCAAAGTCTTTATCATGATGGACAACACCCTGTCATTTGAACTCTATGGTTCCTTCTGAAGAAACTGCTTTCTTTCTTGGTCTCTCCCTCTGTATTTAATTCCATATGGTGCTCAGTTCTTAGTCCATATGGGTCAGAGGGGAAGCCTCCATAGTCCTTAGTCCTGACGTCTAGACCTGTTTATGTTCCACCCCATTTCCTGTGCGTGGAAGACCTGCTCAGGAGATGGAAACATTGGCTGCTGCTCCTTGGCATCTGCTGCCCCAAACCTCATGGAAGAGTCTCCAGCCGTCTCCGCCTGTCGAGGTCCCTCGGCCATTTCTTCCATTCTGCTTTTGCCACTTTCATGGGGGTGTGTGATAAGCGAGTGGGTTCTATCTTCTAAGATTGTTCTCAGCATAACCGTAAAGACACCTAACAAAATCCTTCTGTCATTGATCCTCAGTCTTACATGGGGTGCGTATTCTGTTTTTCCAGGCTTCAGCACAGAAATACAAGTACTGCATGTTGTCACTTACATTTGGAATCTAAACCAATAAAACTAATAGCAGCAAAGAGTAGAATGTGGGTTACCACAGGTTGGGGACTGGAGGGAATAGGGAGATGTTGGTCACTGGGTGAAAACATTAGGAGTAAATGATAGGTTTTTGAGATGACTTATATGGTAATAGGCTTGTTTCCATCAGTCCATATTGTATACCTATAACAGAATATCAGTTTGTTTCCTGTAAATATATATAACTATAATTTGTCAATATAGAATTTTTTTAAAAATCATATTCCAGTTCTTATTGTGTTGGTTCTAAATAAAAATGCTTCTTTCTCTTAAGACAAAACTGTTTATTATTCCACGGACAATAATTTTTTTTTTAAATGAAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACCGCAACTTCTGCCTCCTGGGTTCGAGAGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCGCCACCATGCCTGGTTAATTGTGTATTTTTAGTAGAGATCGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCTCGACTTCAGGTGATCCACCTGCTGCAGCCTCCCAAAGTGCTGGGATTACAGACATGAGCCACTGCACCTGGCCAATAATTTTTTTTTTAAGTTTCCACACATGGCCTTAAACAAGAACATTTTATATATGCAGTTATTCCTCTCAATTCATTTTATCATAGGCTGCTAGAATATCTTATTAGTTGATTTTCATAAAATGAATACATTATGGTTTTCAGCAGGTATTGTGAAATATAACTGTCAGGCCAGGTATAGAGGCTCACGCCTATAATCCCAGCACTTGGGGAGGCAGAGGCAGGCAGATAACAAGGTCAGGAGTTCGAGACCGGCCCGACCAACATGGTGAAATCCTGTCTTTACTAAAAATACAAAAATTAGCCAGGCATGATGGCACATGCCTGCAGTCCCAGCTATTCGGGAGACTGAGGCAGGAGAATCACTTGAACCCTGGAGGCGGGGGTTGCAGCAAGCCAAGATCGCAGCACTACACTCCAGCCTGGGGAGCAGAGCAAGACTCTGTCTAAAAAAAAAAAAAAAGAAAGAAAGAAATATAACTGTCATGTACCACTTACTAATGCTGCAAAATTATCTGCTCTGTGTGGATATAGATAGTTATATAACAAGTATTTCAACACATTTTTTTCTGACATAGTTTTATTGAATGTTCATTTTCCTAGTGCTATGATGGTTTTGCAGTTCAAAATTCCCGCTTCTTAATTATGTTTCCTGTGAGCTCTTTGCCATTATAATATATTATGTTGTACTTTAGTATGTATTTGTACATAATGAATATGCTTTAAATGTGTATAACTTATTTTTCTTCAATTGAGATAGCCATATGTTTTTGGCCAATTGGTATGTGCCGTGAGGTCAGCGTGGAAAAATAATCCTCTGATGGCTAACATAGGATTCACAACGTGAGTGTTTTGGTCATAGGTAGTTTGAATCTAGGCTGCCCGATTTTTTTTTTATTTTTTTATTTTTTAAGACATCTCACTGTCTCTAAGGCTGTAGTGCAGTGGTACAATCATAGCTCACTGTAACCTTGAACTCTTGGGCTAAGGCAATCCTCATGCCTCAGCCTTTTTTTTTTTTTTTTTTTTGATGAGACGGAGTTTTGCTCTTGTTGCCCCAGGCTGGAGTGCAGTGGCGCAACCTCACCTCCTGAGTTCAAGCAATTCTCCTTCCTCAGCTTCCCAAGTTGCTGGGATTACAGGTGCCCATTACCACACCCAGCCAATTTTTTATATTTTTAGCAGAGACAGAGTTTTGCCATGTTGACCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACCGCACCCAGCACCCTCAGCCTCTTGAGTATCCAGAATTGCAGGCACATGCCAGCATGCCAAACTAATTTTTTTATTTTTATTTTTTGACGGAGTCTTGCTTTGTCGCCCAGGTTGGAGTGCAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGAAGCTGGGACTATAGGCGCATGCCACCACGCCTGACTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAAGCTGGACTCAATCTCCTGACCTCATGATCCACCCACCTTAGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCACACCTGGCCTAATTTTTAAATTATTTTGTTTTTGTAGAGATGGAGTCTTGCTGTGTTGCCCAGGCTGGTCTCAACCTCGTGGCCTCCTGTGATCCTCCCACCTTAGGCTCCCAAAGCATTGGGATTACAGGCATGAGCCACAACAGCCAGCCCTTCCCAAATATTTGAATTACATGTAACTGCATTTTCTTTGTTAAAAAATACTACTTTTGGCTGGGCACAGTGACTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCAGGCGGCTCATGAGGTCAAGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAACAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCGGGAGAATGGTGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCAAGATCACACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAACATTTTTGTTCCTAACAATTGAAATTCACAGTTCTGAAGTTCCAAAGTCTGTTCAATATAAGTATTACTTTTGGTGGAATATGTTTTCAATGTAAAATATTTATTTCTATACTGTAATTAATTGGAAATTATGTGGTTCTTTATATCTTGTAG
Seq C2 exon
ATATCCCTCCTAAATGTACAATCAAGGATTTGCTACCAAAAGAGAAGAGCAGTACAGAAGCAGTATTCCACACAGTGGTGTTGGAAAGACACGAAAGCCCTGACATTGAAGACTTTTCCTTCAAGGAACCCCAGAAAAATGTGCATGATTTTGAGTGTCAATGGAGAGATGACACAGGAAATTACAAGGGAGTGCTTATGGCCCAGAAAGAAGGTAAAAGAGATCAACGCGACAGAAGAGACATAGAAAACAAGCTTATGAACAATCAGCTTGGAGTAAGCTTTCATTCTCATCTGCCTGAACTGCAGCTATTTCAAGGTGAGGGGAAAATGTATGAATGTAATCAAGTTGAGAAGTCTACCAACAATGGTTCCTCAGTGTCACCACTTCAACAAATTCCTTCTAGTGTCCAAACCCACAGGTCTAAAAAATATCATGAACTTAACCATTTTTCATTACTCACACAAAGACGAAAAGCAAACAGTTGTGGAAAACCTTATAAATGTAATGAATGTGGCAAGGCGTTCACTCAGAATTCGAACCTTACAAGTCATAGGAGAATTCATAGTGGAGAGAAGCCTTACAAATGCAGTGAGTGCGGCAAAACCTTTACTGTTCGTTCAAATCTAACTATTCATCAGGTCATCCATACTGGAGAAAAACCTTACAAATGTCATGAGTGTGGCAAGGTCTTCAGGCACAATTCATACCTTGCAACTCATCGGCGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGAAAAGCCTTTAGAGGACATTCAAACCTAACTACCCATCAGTTAATTCATACTGGAGAAAAACCGTTCAAATGTAATGAATGTGGCAAGCTCTTCACTCAAAATTCACACCTTATAAGTCATTGGAGAATTCACACTGGAGAGAAACCTTACAAGTGCAATGAGTGCGGCAAAGCCTTTAGTGTTCGTTCAAGCCTAGCAATCCATCAGACAATCCACACTGGAGAAAAACCTTACAAATGTAATGAATGTGGCAAAGTCTTTAGGTACAATTCATACCTCGGAAGGCATCGGAGAGTTCATACTGGTGAGAAACCTTACAAGTGTAATGAATGTGGCAAAGCCTTCAGTATGCATTCAAACCTAGCTACCCATCAGGTCATCCATACTGGAACAAAACCTTTCAAATGCAATGAATGCAGCAAGGTTTTCACTCAAAATTCACAACTTGCAAATCATCGAAGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGGAAAGCCTTCAGTGTTCGTTCAAGTCTGACTACCCATCAGGCAATCCATTCTGGAGAGAAACCTTACAAATGTATTGAATGTGGCAAGAGCTTCACTCAAAAATCACACCTTAGAAGTCATCGGGGAATTCATTCTGGAGAGAAACCTTACAAGTGTAATGAATGTGGTAAAGTCTTCGCTCAAACATCACAACTTGCAAGGCATTGGAGAGTTCATACTGGAGAAAAACCTTACAAGTGTAATGACTGTGGCAGAGCCTTTAGTGATCGTTCAAGCCTAACTTTTCATCAGGCAATACATACTGGAGAGAAACCTTACAAATGTCATGAATGCGGCAAGGTTTTTAGGCACAATTCATACCTTGCAACTCATCGGCGAATTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGGAAAGCCTTTAGTATGCATTCAAACCTAACTACCCATAAGGTCATCCATACTGGAGAGAAGCCTTACAAATGTAATCAATGTGGCAAGGTCTTCACTCAGAACTCACACCTTGCAAATCATCAAAGGACTCACACCGGAGAGAAACCTTACCGATGCAATGAGTGTGGGAAAGCCTTCAGTGTTCGTTCAAGCCTAACCACCCATCAGGCAATCCATACTGGGAAAAAACCTTACAAATGTAATGAATGTGGCAAGGTCTTTACTCAAAATGCTCACCTGGCAAATCACCGAAGAATTCATACTGGGGAGAAACCTTACAGGTGTACAGAGTGTGGGAAAGCCTTTAGGGTAAGATCAAGTCTAACTACCCATATGGCAATCCACACTGGAGAAAAGCGTTACAAATGTAATGAGTGTGGCAAGGTCTTCAGGCAGAGTTCAAATCTTGCAAGTCATCACAGAATGCATACCGGAGAGAAACCTTACAAATGAGTGTGGTGAGGTCATTAGGTACAATTCACTCCTTTCACATCAGTTAATTTCATTCTTGACAGAATCCTTACAAATGTAGTGACAGTGGCCAATCCCTCATGAGTTGAAGCATTAATAGATATGAGAGGCCATAAGCAAGAGACATCATGTAAACATATGTGGCAGAGGGTCTATCCAGGCCTCGCAGGTTACTAGGCATCAAGATTTATATCTTTGATGAAACGAAACAAATGTAATATGCATCCTGAGGCCATTACCCAGTGACCGATGGTAAGTGAGGATTCCTAGGAGGAATAACAGTCTCTGGTTTCCCTGTTTGCCTTTGATATTATACACTGTAGAATACTCACAAGTCCAAATATGCTAAAAATTATATATTTTTAACTCACATACGAAAAGGTTGCAGGATATTTGTAGGCAGTCAGTTACCTTCACCTTATGAAATGTTTCACTGAGTTATTTGAGGTTTTTTGGAAAGCCTACTATTGCGTTTCAATGTGAACTTTGAAATCTTATTGTGCATCCTTACACACCTTCCATGGTGCTTTCTTGGAAAGATCATTGGGATGGAAGGATCATTGATTGGGTGAAGATCATTGATTAGGTGAAGGATTATTTCTATCCAATTTGTGAAGAAGGAGGACTTTGCTTTTAAAATTAAGTATCATCTGAATTAGCATTTGGGAGTGGCGAAAAACAATGTAAAACTATGATGTCACTCACCATTCTGATAATGTTCAGGGTGCCTTTCTCCTACCAGGAGAGTACTGTGGCTTAGAGGAAAGAAATGGTCTATCAACTGAACATGAAATGGAGCAGGCCAAGACCTTAGGACATTGGGATTTTTGTGGGAGGAGAGTAATAGGTAATTAGACACTGATTGTGTGGTAGAAATACTGCAGGGGAAAAGGTCGCCCTCTTATGCATCAAAGAGCAATACCTGTTGTTTAGCAAAGAGTGATGAAAAATTGATCTTGTTTTGAAATTGAAGAGAGAGGCCAGGCGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCAATTGTACTAAAAATACAAAATTAGCCGGGCGTGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAGTGCTTGAACCCAGGAGGCGGAGGTTGTGGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAACAAGAACAAAACTCCATCTAAAGAAGAAAAAGAAAAACTGAAGAGAGAGTAGTTGTCAGAGTGAAGAGTTTAATCAACAGAAGTAGAGTAACATATTCTTTAGTAGAACTCACATTATCTGCTTGAAGCACATTTTGCTAATGTTTTATTCAGAATGTATCATAGATATAATGTTTTAACTAATAAAATAGAATGGTTTTTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170949-ZNF160:NM_198893:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF054957=zf-CHY=WD(100=11.7),PF079757=C1_4=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF054957=zf-CHY=WD(100=11.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.7),PF0013017=C1_1=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF054957=zf-CHY=WD(100=10.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF097235=Zn-ribbon_8=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF0013017=C1_1=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6),PF0013017=C1_1=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=3.4),PF134651=zf-H2C2_2=WD(100=3.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)