MmuINT0178658 @ mm10
Intron Retention
Gene
ENSMUSG00000067942 | Zfp160
Description
zinc finger protein 160 [Source:MGI Symbol;Acc:MGI:108187]
Coordinates
chr17:21020706-21028852:+
Coord C1 exon
chr17:21020706-21020834
Coord A exon
chr17:21020835-21025460
Coord C2 exon
chr17:21025461-21028852
Length
4626 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCACCCCTTTCCATCTGCAGAAA
3' ss Score
10.26
Exon sequences
Seq C1 exon
GAGTCACACTTCCAAATTTGAATGCTATGTCTAAGTTGGAACAATACAAAGGGCCCTGGACTGTGGAGAGTGAGGCAATAAGAACCAGAAAATCAAATGGAAAGGAATATATCAGAGCTATGAGTGCAG
Seq A exon
GTAAGCTCTAAAAGGGCAGAGTAGATGCTACCTCACTGTGTAATGGCAAGTGCAAGGGCTCAGTGAGAAATAAGTCTGCCACTATTCTTTACAGGTACAAAAATTTAGCCATTCACCCTCATGTGGTGCCAGGTAATTTTGTCTGGTTTTAATCTTGTTTGTGTATTTGAGGTAGTGTCTCACTTTTTTGTTCAGTCTGATCTGAAACTCACTGTGTAGCCCAGAGTGACCATAACATCTGAGTAAGCCTCCTGCCTCAGCCTTCCAAGTGCTAGGATTGTGTGCGTAAGCTACCATATCCATTTATGTACAGATAATTAAGTTTTGACAAAGGTGCTATGTGTGTTTACTAAAAACTTCATGATGAAATATTTGACTCTCTGTGCCAGTGTAATATGTTCCAGAACTGTAGGCAGGAGAATGGGTTATAAGATATTGCTGTTCAAACCAGGCTGGCATGAAAAATCTCAGTTCTTTTGCCTCAGTCTGGCAAATGATGATATTACATATGACATTACATATTACTTCCATGCTTGCCTGACATAGAACTTTGAAAAGGTGAGTCTAGTTGAAAATACTAACTGGATATGCCACCCTCAAAAGGAATAATACTGAATATAATGCTATATTAGTAATAGAGATCAGTTATGAAATAATCAGGCTAAACCAGGCATGGTAGTGCATATCTTAATCTGTGGACTTGAGAATCTGAGGCAGGTGGGTATTTATAAGTTTGAGAAAAGCCTGATGCACATATTAAATTCCAGACAAATCAGGGCTATGTAGTGAGACCCTGTCCCAAAGGAAATCAAAATTAAAAATGAATAGCCTAACAAGCAAAACAGCACATAATAGTTCTTTACTTGGTTCATTTTGCTCAATAACATACTTTTCAGACTGATAGACATTGTTGCAATTAGAACTTTCTTTGTCTGAAAAACAAGTAAAACAAATATAATACATATAGAGTCAACTGGTTGCATAGGAAGGCTAATTAAATAATTAACTACTAGGAACAACACTGAGAATTGTATAAACATCCCATAGACACATCAGTCTTCTAGATCTACAGAAGCTGAGTTGCTGGATGATACAATACCAGCATCCTTTCTGGATCATCTGTCTCAGTACAACACCTCGTCCATACTTATTTTCATTACTGCAAAACTTCACATGAGTGACTGAGAAGAACTTTGGTACTGTGTGCTAAATGACCAGGTTTTGGGTTTTTTGGTTTTTTTTTTTTGTTTGTTTGTTTGTTTTTAATTTACCATCAGGTATTTCCCTCTGGGTTTGGAGAAAGAATTTGCATATCATATATCCAACAGAGAAAGCCAAAGCAGGAAGCCTGAAACAAGTCAGTTTGAAAACAGCACACTTAAAGATGGGGATGGACTTAACATGTGCACGCACAGTGTAGAAGAGGTTAAGCTCAGGGCCTAGCTGAGATAGTATTCTACCATCTTCCACTCACCATTAGAAATGTTGGTATTTCCCTTCTTTTTATTTATTCTTTTTTGAGCACTGCAGAGGCCACTCAGCCTCCTCTGTAGATGGATTATAAGTGTACATTGCCATGGCCAGCGTAATAGAAATTTACTGAACAGCAATGGCATACAAAAATACTATTATTGCAGAAATACCAATTTTCACCCAAATGAGCCATTACCTTCACTTGCAAAAATTGCTACTTTGGAAAAGCTGAGCCTTGGTTTGGATGTGAGGGAAAGGAGAATCTTATTATGTGTTGGTTAAAATATAGATTAGGATTCATTGAGACCTTTTTACAGAGACATCAAAAAAAAAAATAAGAGTTATTGTATAATCAAGCAACTGAGCTTTTGAGTGTAGATCTTGAAACCTCAAGATGATGTTTCTGTGGGATGTCTGTATTGTTCTTGTGACATTATTCACAAGTAACCAAGTTATGTAATAGACCATGTGTCCATCACCAGCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCCCTCTCTTGTGTGTGTGTATGTGTGTGTGTATGTGTTTTATATGAATTTTGTCCTGCAAAAAACATTCTACTTATTACAATGTCTATCAGCCTGGACAATCTATACACAAAATAAATCCGCAGTTAACTGTCACGTTTTGTTTTATTGGACACCCACTCCAGTTCTGACAATTTTTCTGTGGATAAGAGGAATTCATTCGGGGATCATAGTCTTCATTATATATTATCTACATATTTTCCGTATCCATTATTTATCTGTTAACATACATATAGGTAAACGCCATTTGTGTATCTCTCTACCCATATATATGAGTTTTATATATATAAAATTTAACTCAATTCACCTAGAAGCAGGGGAACAGAAAGATAGTCAGCAGGTATAGAGGATATTAATCAGTTAGTGGTCAGTGAGACCAGAGTTTTAATGAAACAACAGGGTCAATAAGTGCATTTTTAAATGGTGGGTATGATCATATGTTTCCATCTTGTTATCACTTTGTTACACACACACATACACACACTGAAATATCATGTTTCTGTCTTAAATCATTTTGTTATATACATGTACATATATATGTATATATAGAATGACTTTAATATAATCATTAACATATTACTTGTTTAAATTAGTGAGATACATCATTCCATACATGTGTATTTTATTGCCTTGATCATGTTCACTCTCCAATTTTTGTTTTACTATATCCTCTTATTCTCCTTCCCCTTCCCTTATAGACTTGGTTCTTTATAATTCTTTGTTCAAACTTAAAAAAGAGTTTCCACATGTAAGAGAAAATATGCTATATTTTCCTTTCTCTTTTGTTTATTTGCTTAGCACAATGCCGTATATTTCTGTCAGTTTCTCTAATGAATGACAGAATCCCATGTATTCTTTGTGACTGAATAATAACATAAAATGTAGGTGCATGCATAATTTTCTTGGGTTTTTTTTTCCCATTTTTGTTTGTATGTTTTGTTTGGTCACTTTATTTGTTTTTTGCTTTTCATGACATGGTTTCTCTGCAGCTACGGCTGTCTGGGAACTCATTCTGTACACCAGGCTGGTCTCAAATTGAGAGATGCACCTGGTGCTGCCTCTACTGACATCACATTATTTTCTTTATTCATTTGCCGGCATACATGAAACTGATTCCATATCTAGGCTCCTGTGAGCCTTACTGTCATAATTATGGTTATGCAGTCAGTCGTGTCCTCCTAAGAGTGACTTCATTTCATACAAATGCAAACACAGTAGTGGAATGGCTGAATGCCATGTTCCTTTTATTGTTTGCTGTTTCTGCTTAGAAAACCCTGTTTTCTCCTTAGTAAGAAAGTGTGTCATTTTACAACATACAGAATTTTATTTTCAATGTATCTTATTGTTTAATAATTTGTATATATGTGTGTATACATGTGAGAGCAGATGCTCTCAGAGTCCAGATAAAAGTTTTGGAAACCTGGAGTAGGTGATGTACAGGCAATTGTGAGTTGTCCAGTGTGGGTGCTGGGAACAGAACTCAGCTGTTCTGCAAGGGTGGTACATGTTCTTAATGCCTCAGCCATCTCTCTAGCTCCTACATTTAGCAATTTATGATATATATATATATATATATATATATGTATGTATGTATGTATTATTTGCCTGATTGCTTTATCATGGAATTCTAGAGTTGTTTTGTAATATTTATTAGGACCTACAGGTGCCTGATTTTTGTGTGTTCTGTGCAGTATAACAGATTTGTACTGTTGGTTCATGTTAAAAATGCCTTTCATGAGTTGGTCTAGGTAAGTTTTTAAGAGGTTCTTGTTTTTGCTAATACAGTTTTTGTGAGTTTTTTCATGTCTTTTTGCTATTGTTTTGTATTTCAAAATTGCAATTTAACTGATTATATAAAGTATCTATTATTAAATTCTATTATCATATTCTATGGTATTTTATATACATTTATGCAGAATATACTGTTAATATCACTTTTTTTCCATTCACTTGTGATGCAGCCATATACTTTTGGTCAATAATATATACATTTATGATGTGATGGAAAAATGATCTTTTCTTGGATTATATATCTTAATATGAATAATTTGGTCATAAGTTATTTGAAATGAGTCCTTTCTTCTAGTGATTAAAATTATATACAATTACCCGTACATAATTATGAAATCACTGTTTTGTGATAATTAAATTGGCTTTTAGGTTTCAAAATTTTAATAAATGAACTCAGTAAAATTTATTTTTGCTGTAAATATTTTTATTGTACAATATCTTGTCTATACTTAATCAGAAAACTGTTATATCTTCTAGTTAACTCTCCTGAATATATAATTAAAGGGAGTAGAGATTCAGGGGAAATAGTCCAGACAAAGGTGGCAGAAAGATATAAAAGCAATGGCATTGAAGAGTTTTCCTTCAGAGAAATCCAGCAGAACATTCAGAATTTTGAGTTTCAGTGGAAAGAGCATGAAAGGAATTATAAACCCATTTGTAGAAGAGATCAAGATAGTGGAAAGGAGACAGGAAGAAACCTTAGGAAAAATCAGCATCTGTTAGGCTTTACTTTACATCTGTCTGAACTGCACCCCTTTCCATCTGCAG
Seq C2 exon
AAAATATTAATGGTAATGAAGCTAAGTCCATCAGCAGTGGTTCTTCAATTTTGTCATCTGACAAAATTCTTGCTAGTGGTGACAAAGCACCTGTTGTTCATGAATATGATGTTTATTCTTCACTACGTATAAAAGGACAGAAAGCCACCATTAAGGGGAAACCTTATCAATGTAAAGAGTGTGACAAAGTCTTCAGTTATACTTCTTCTTTAGCATATCATCGGCAGATTCATACTGGAGAAAAACTTTACAAGTGTCTTGAGTGTGGTAAGGCTTTTTTTCGACGTTCTTATCTTTTGGTACATGAGAGGCATCATACTGGAGCGAAACCTTACAAATGTAATGAATGTGGCAAGGTGTTCAGTCAGAATTCACACCTTAAGAGTCATCGAAGAATCCATACTGGTGAGAAACCATTCAAGTGCAATCATTGTGGCAAAGCCTTTAGTGTTCGTTCAAACCTAACTCACCATCAGGTAATCCATACTGGAGATAAACCTTATAAATGTAATGAGTGTGGCAAGGTCTTCAGTCAAACCTCAAGCCTCACAATTCATCGTAGAACTCACACTGGAGAGAAACCTTACAGGTGCAATGAGTGTGGGAAAGTATTCAGTTCACATTCAAACCTAAATACCCATCAGGCAATCCATACTGGAGAAAAACCCTACAAATGTTCAGAGTGTGGCAAGGTCTTTACTCAGAATTCACACCTTGCAAATCATTGGAGAATACATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAAGCCTTTAGTGTATACTCTAGCCTCACTACCCATCAGGCAATCCATACAGGAGAAAAACCTTACAAGTGTAATGAATGTGGCAAGGTCTTCACTCAAAATTCACACCTAGCTAGTCACCGTGGAGTTCACAGTGGGGAAAAGCCTTACAAGTGTGAAGAATGTGGCAAACTCTTCAGCCAAACTTCAAATCTTGCAAGACATTGGAGAGTTCACACTGGAGAGAAGCCTTACAAATGCAGTGAATGTGGCAAAGCTTTTAGTGTGCGTTCTAGCCTGATTGCCCATCAAGTAATCCATACTGGAGAAAAGCCTTATAAATGTACTGAATGTGGCAAGGTCTTCAGTCAGACTTCAAGCCTTTCAATCCATCAAAGAATTCACACTGGAGAGAAACCTTACAGATGCAATGAGTGTGGAAAAGCCTTTAATTCACATTCCAACCTAAATACCCATCAAGTAATCCATACTGGACAAAAACCCTATAAATGTATGCAATGTGGCAAGGTCTTTACTCAAAATTCACATCTTGCAAATCATCAAAGAACCCATACAGGAGAGAAACCTTACAAATGTAATGAGTGTGGCAAAGCCTTCAGTGTGTACTCAAGTTTGACTACTCATCAGGCAATCCATACTGGAGAAAAACCTTATAAGTGTAATGAATGTGGTAAAGTCTTCACGCAAAATTCACACCTAGCTAGTCACCGGAGGACTCATACTGGAGAAAAACCTTACCAGTGTAATAAGTGTGATAAAGCCTTTAGTGTGCGTTCAAGCTTGACTACCCATCAGGCAATCCATACTGGAGAAAAACCTTACACATGTAGTGAGTGTGGCAAAGTCTTTAGTCGAAGTTCCAACCTTACAAGTCATCAGAGACTTCATGTTGGACAGAAGCATATGTGAATATAGCAAGGTCTTTGGGCATAATTCACTTCTTGCATAATATCCAGGAATACAATCCTAATAAAATGTTAGTATTGTGTTGACGATAAACACCCATCATGAGTTCAAATATGTCACTAGATGTAGTGGTATGCATGTACAACCACCCTTTTCAGGGTGTTGTGGGAGCATTGTCTGCTTGGCATATGTAGGAAGAACTTGACCTAAATTTAAAAATATATCAAGCTTTTGTAGACATATAACATATTAAGAAGACATTTCATACATGTAGAGAAGATGCTTCAGGATATGATTTCCACCTCTATAAACCCAAAAATGCACATTGTTGATGAAATAATCCAATTGGCACTTATTGAGGATGTTACTTAATGACTATTTACAGTGGAAGGTGAATAGAAGGAGTTATTCAGCCTCTTGTTTTTCATGGCTAATCTTCAATGTTACATTCCACAGAATAATTGATAATTACTGAACAATTAAAAGTCAAAATAGCTAAAACGTGATATATTTGAAAGGTTGAAGATGGTTGATACTTGCCTTTAATATTCGTGTACTCATTTATTTATGGTTCCTTGAAAAATCTGCTTTGCCATTTGTAATTGTTATCTGAAACTTTCTGATGATACAATACCTGCCTCAGGGGCCTTTTATTGCAGCCTTTGGGAAAAATAGGGTAAAAAGTCACATTAATAGAAAAGGGTCATGTATGTCTGGTTTTTGAGAATGACTCCATTCCACCTTTTGAATTAAGTATTGGCTAAGATATGTTCCTAATTTGTGTTTAGATTCTGTATTAAATGCCATGACTAAAGCTAACTTGGTGAGAAAGTGGTTTATTTCATCTTATAGGTTATAATTGATCAAGAGAAGCCAGGATAAAGGCTAGACTAGGAACCTGGAAGCAGGGACTAAGGAAGAAAATGGAGAAATGATACCTGGTGAATTGCTTTTCTTGGCTTAGCTTCCTTCATACAACCTAGGACCATGTTCCAAGGGGTGGCACTGCCCAAAGTGGTCTATGTCCTCATATATCAGTAATTAATAAAGAAAATACTTGACAGAAATGGCCAGAGTCCAACCTGATGAATGTGAAGGGTCTCTCTTCTCAGGAAACTCTAGTTTGTGTCAAGTTAAAAGATCTATCCATATCATTTGTCATCTGAAAGGGACAAGATATTGTAAAATTACAGCATAAATTTATCGTTTATTGTATATGATGGAGCATTCTGTGGGGTAAAAGCAATTAAGTTGGAAAGAAATGATCTACCATCTGATCATTGGATACAGAAACTGCCACAAAATTAGGATACTGCACTTTTTGTGAAATAAGAACAGTAGGCTATTAGGGATGTGGTGTTTGTCAAATAAACTGCAGAAGACTTAGTGAACTTCTTTGAGTAACAACAGGTTTCATATTAGGAAATAATAATTTTTCTTACTTTTAAAATTAAAGTGAAAAACATTATTAGAATGGAACTTATCTCAAAGAAATTTTAGGGGCTGTGTATGTAGCTAGAAAAGAAACACTTGTGTCATGCATGTGAGGCCCTAAGTTCAATGTTCAGCAGCACCAAAAGTAAAAAAAAATACACAAAACGTTTCTTAAGAGTGACATCATTTAACTATTGTTGTTAAGTTTGTCCACTGTCTTATTCAAAATATATCATTAATTGAACTTGTAACTAATGAAAGTAAAGCTTTTATTTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067942:ENSMUST00000088811:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0013017=C1_1=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types