DreINT0150534 @ danRer10
Intron Retention
Gene
ENSDARG00000104278 | slc2a8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-030829-25]
Coordinates
chr5:65299854-65300941:+
Coord C1 exon
chr5:65299854-65300065
Coord A exon
chr5:65300066-65300791
Coord C2 exon
chr5:65300792-65300941
Length
726 bp
Sequences
Splice sites
5' ss Seq
GAAGTTAGA
5' ss Score
-2.52
3' ss Seq
TGACATTTGGTTGATTGCAGGAG
3' ss Score
6.89
Exon sequences
Seq C1 exon
GTTTGTTCCTGGACTGGCGATGGTTAGCAGTGGCATCATCTATTCCTCCCACACTCATGCTGCTGTCCATGTGCTTCATGCCGGAGACGCCACGATTTCTGCTCTGCCAAGGGAAACGGCGGGAAGCAGAGGACGCCCTGCGCTTCCTTAGGGGTCCTGATGCCCCCGCCGAGTGGGAATGCGCTAGAATAGAAGATGCCTACAAAAATGAA
Seq A exon
GTTAGACATCACCAAGTTTTTTGGTTCTTCATTTTATTGAACATAATGAGCTGCCTTTCAAAATTAAAGTCAGCGTTAAAAGCCAGTTTTAGTTTTTTTAATGTGCCTATTTTTTGTGAACTTGATATTCAGTGAGTTAAAATGTGACATAAAAGAGATAGTTCACCCAAAATTATTTTTAATTAAAACTTATAGATTTCTGTCGAACTGATTTCTCGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCTTCGCCCTGAAATATTGTGTTGTAGGTCTTAAATCATTTTAAACAGGCCCTAATTTCTTTATGTCTTAGTAAAACTAGCCAGTCTTGTTGACACCCAATCACCTGCAATTGATCTCCAAGCTTTTTTATGTATATATTTAAGTTTTTCATTGCAAAGTGATACAATTCACAACAGCTGTTAGACATTTTTACAGCAAATTCTCCAGGGAAAAAAAACTAAAGCAACACAGCCTGTGATGAAGGTTTAGAATGACATTATGGAGATTAAATTATGAATTAAACTATTAAATTTCAAATGTCTTAATTAACTTTTATTCACTGGGATCCGATAGAATCATTAAAAGTGGTTGCTGTAAGTCAGAATAATCATTTTATTATAAATAAACAATTAATAAATGAAAAAAATGCTGCATGGAAATGTATGAGCTGTTAAGATTGACATTTGGTTGATTGCAG
Seq C2 exon
GAGCAAAGCTTCAGTCTGGGGGATCTGAAGGACCCTGGTGTCTATAAACCTTTGGGCATTGGTGTTATGATGATGCTCCTCCAGCAGTTTACCGGCATCAACGCCATCATGTTTTACGCAGAGACCATCTTCGAGCAGGCCCATTTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104278:ENSDART00000166432:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.4=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTTCCTGGACTGGCGAT
R:
AAATGGGCCTGCTCGAAGATG
Band lengths:
358-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]