MmuINT0146139 @ mm9
Intron Retention
Gene
ENSMUSG00000026791 | Slc2a8
Description
solute carrier family 2, (facilitated glucose transporter), member 8 [Source:MGI Symbol;Acc:MGI:1860103]
Coordinates
chr2:32831657-32832580:-
Coord C1 exon
chr2:32832381-32832580
Coord A exon
chr2:32831801-32832380
Coord C2 exon
chr2:32831657-32831800
Length
580 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACAGGCCGTCTTTGTGACAGGGC
3' ss Score
6.2
Exon sequences
Seq C1 exon
GCTGGGTCCTAGAGTGGCGCTGGCTGGCCGTGCTGGGCTGTGTGCCCCCCACCCTCATGCTGCTGCTCATGTGCTACATGCCCGAGACCCCACGTTTTCTCCTCACTCAACACCAGTACCAGGAGGCCATGGCTGCCTTGCGCTTCCTGTGGGGCTCTGAGGAGGGCTGGGAAGAGCCCCCTGTTGGGGCTGAGCACCAG
Seq A exon
GTGAGAGACTGAGAACAGGGCAGAATGCAGAGCCTGTTCCCAAGGCCACACACCTGACTGGCAGCCCCACCCCCACCCTCAGTGAGGACCAGTGCTGTCTGAGCAGGTGGGGGTTGGCTGGAGCCCCACTTTAGTTCGTACCATCCCCCAACAAGTGAATGGCCAGGCCTGCGAGAAGAAATGGGTGAGGGCTTAGATTTAATGGGAACCATAGGCAGAGGAGATCTCAGAGGCAGTAGCACACAGACACTGCCACTGTGTGGCCTGGCCATCTCCGAGTCTTGGTGCCTTCATCTCTAGCTAGCCCACACCATCACCCGGAAGTGCTGAGATCTGTGTACATGGCTGCTGGAGGCCAGCCCTGAGCACACAAAGGGCTCGGCTCTCGGGCAGCAGAATCCTTTACCCAGATGCTGGAGTGTGCAGCCCCTCACAGCTCCCCTCCCACGTGAGGAGGCTGCAGGGGCCTATCTGCACACTCAGGGCAGCAGGTGGGGTGGGGACAGCAAGGAGGCTCAGTCCCCTCCACCGAAGGGTCCTTGGGTCAGGAGAGAGCACTGACAGGCCGTCTTTGTGACAG
Seq C2 exon
GGCTTCCAGCTGGCCCTGCTGAGGCGCCCTGGCATCTACAAGCCCCTCATCATCGGCATTTCCCTCATGGTCTTCCAGCAGCTGTCAGGGGTCAATGCTATCATGTTCTATGCCAACAGCATCTTCGAGGAGGCCAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026791-Slc2a8:NM_019488:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(14.8=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGTCCTAGAGTGGCG
R:
TGAACTTGGCCTCCTCGAAGA
Band lengths:
342-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: