HsaINT0152368 @ hg38
Intron Retention
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 member 8 [Source:HGNC Symbol;Acc:HGNC:13812]
Coordinates
chr9:127402364-127403747:+
Coord C1 exon
chr9:127402364-127402753
Coord A exon
chr9:127402754-127403659
Coord C2 exon
chr9:127403660-127403747
Length
906 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCAGTATCCGTCAGAGCAGAGC
3' ss Score
-4.92
Exon sequences
Seq C1 exon
GCAGCTGGTGTGATTGGCCCGTGCCATGTGCCTTCATGAACAGTTGTGATAATGGCAATGTCAGTAGCGAACATGAGGGCAGATGTGCAGAGGCAGCGAGGCCCCATCTCTGAAGCTGAGTCTTTGAGGCTGGCAAGGCCCAGGCTGGCTCACCCTGGCTCTGACGCCAGCCTCCTCCACCCACCCCCCGCAGGCTGGGTGCTGGAGTGGCGCTGGCTGGCTGTGCTGGGCTGCGTGCCCCCCTCCCTCATGCTGCTTCTCATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCAGCACAGGCGCCAGGAGGCCATGGCCGCCCTGCGGTTCCTGTGGGGCTCCGAGCAGGGCTGGGAAGACCCCCCCATCGGGGCTGAGCAG
Seq A exon
GTGAGAGGCTGGAAGGCAGAGCTGACAGGAGTGGGACAGCAGTCACGGGAGGGTAGCACAGCCTGTTCCCAAGGCCACACACTTGGGGGGTGGGGGACAGGGAGGTGCCTATCCACCCTCCACCCTCAGCGAGGACAGGCCCAGTGTGTCCTGTCTTTGAGCAGGCCAAGACAGCTGGAGCCCCACGGAGCTGGGCCCTGGCCTCCAAAGTCACCAGCAAAGCCCGAGCTTTGACCCTTACTGTCCCAGGAAGAGAATGGCCAGGCCTGGTGGGGGATACAGAGGCAGAGCTGAGGACTTGGATTTAACAAAGGAGTTGCAAGGCAGGGTAGAGGGCTAAAAGTCTGGGTTTTAGAGTCACCCAGGCATGGGTTTGAAGCCCCCACGCTGCCCCTCACCTAAGCTTTAGCTCTTCACCTGTGATGTGGGAGTCAGCACCTGCTTCACAGTGCTGGGTGGGACTCAGTGGGGGAAAGGAAGGCGGGGCTTAGGGAGGAGGGGGGCTCAGTGGGGAGGGTGGGGTCAGCGAGGAGGATGGGTTCAGTGGGGAGGGGAGGGTCAGGGCTGTAGGAGGTGCTTAGCTAGGGCCAGGCCCAGACCTGAGGCAGGTGCTGGATGTGTTGGTGGTGGCAGGGATGAGGGCAGCAGCTTGCTCTTTGCCCAGATTACCTCTTTGTGGCTCCCCCCCACCTATCAGGAAGTGCCCTGGGCAGGTGAGGGTCATCTCACCTGACACATGGGGAGGCTGGGACTTGTCTGCACACCTGAGGACACAGGGGGTGCTGGGATGAGGAGCCAAGACGTGGGAGTCAGCGCTCCCCAAGCCTTAGGACAGTAGACCCCCAGAGGGGGGCCGCTTGCGGGAGGGGAGAGAGAAATCCTGATGGCCAGTATCCGTCAGAGCAG
Seq C2 exon
AGCTTTCACCTGGCCCTGCTGCGGCAGCCCGGCATCTACAAGCCCTTCATCATCGGCGTCTCCCTGATGGCCTTCCAGCAGCTGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856:ENST00000484617:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(59.2=87.9),PF100274=DUF2269=PD(59.0=69.7),PF0008319=Sugar_tr=PU(3.5=7.6)
A:
NA
C2:
PF0008319=Sugar_tr=PU(11.8=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTTTGAGGCTGGCAAGG
R:
CTGGAAGGCCATCAGGGAGA
Band lengths:
351-1257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains