DreINT0151529 @ danRer10
Intron Retention
Gene
ENSDARG00000013730 | slc4a4a
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 4a [Source:ZFIN;Acc:ZDB-GENE-060526-274]
Coordinates
chr5:45166808-45169714:-
Coord C1 exon
chr5:45169553-45169714
Coord A exon
chr5:45166987-45169552
Coord C2 exon
chr5:45166808-45166986
Length
2566 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CTTTTGTTTGTATGGTTTAGAAA
3' ss Score
7.44
Exon sequences
Seq C1 exon
CCAACAAGCCCAAACCGTGGCTGGTTTGTGCCACCGTTTGGTGGAAACCCCTGGTGGGTGTACCTGGGAGCGTCTGTGCCGGCCCTGCTGGTCACCATCCTGCTCTTCATGGATCAGCAGATCACCGCTGTCATTGTCAATCGCAAGGAGCACAAGCTTAAG
Seq A exon
GTAGGCCTGCTGCGAGTCTGCTGTGAGACTCTGTCCCAAGCCAGATGGTTTATCACGCTCACTTTGAGCCATGCAGGACCACAGCAAACACTTGCAGTGCTGAGGGCGACTATATCGGGATATTTATAGCACGTTCCTTATAAATAAAACCCTGTAATATTTTGTCTGGAGCTCATGAATCAGCACATGGAGTCAAAAATAGCATCATTCAAACAGATGCACGCCAAGGGGGAAAGTGTCATATAAATAATGCAGGAGCAGCGAAAGGGTTAGTTCGTCCTGAAATGACAATTTCTGCCATCATTCACTCAATCTAAACTCAAAAGATTGACATCCGGAACACAAATGAAGATATGTTGTTCCTCCATTCTAAACTTATTTATCTTACTTATTTTTAAAATTCACAGATATATACTGTATCTATATAACAATTAATCTATACATTGTATATAAATTAGATATGTCCTAGATTAGATTAAAATAATCTTCTGATGTTGAATTAGTTTCTTACCGGTTTTGAAGAGCACAAGGGACAGTGAATGATTAGAGAATTTACATTTTAGCGAGTGATCTAACCATGTAATATTGGTTGTATTTTAATAATTATATAATTATATTTAAGTTATGAATAATAGTCTACTATATGCATGTTGCCTATTGAGTTCACCCCTCACATACAGTTGAAGTCAGAATGAACTGGATACAAATACTCATTTTCAAAAAGGGGTTTTCTCATTAATGCTGGGCACTGTATATGTTCTCATTCAATATTTTCACGTTCAATCTTGGTGCTTCAGAAGGTCATTTTATCCCACTGGCACACTGCTGGTCTACAAAGGCCAGATTCTGAATAGTGGAACAAAGAGGGATTGTGAATCAGACAAAAGCAAAGCTTTTATTCTCTTCTGGTCTGTAATGTGAGACTGGCCTCTAAACATTGGGGCCTGAGTAATGCTTCCCTGTGAAAGGACATTGTTGCCATCTCTATGAAGATTACACTGATCTGATGACCTATCGTATTGTACTTTTAAATTTATGTTTCAATGCAGCACTTAACAAGCCTAGTTGATTATTTAAAGGGACAGTTTACATTTACATTTACATTTAGTCATTTAGCAGACGCTTTTATCCAAAGCGACTTACAAATGAGGACAAGGAAGCAATTTACACAACTAAGAGCAACAATGAATAAGTGCTATAGGCAAGTTTCAGGTCTGTAAAGTCTAAGAAGGGAAGTATTAGTAGTATTAGTAATTTTTTTTTTTTTTTGTACAGTTATAGTGATATTTAAAGAGGCAATTGCAGATTAGGAAGTGAAGTGGAGACTAAATAGTTGAGTTTTTAGTCGTTTCTTGAAAGTAGCGAGTGACTCTGCTGTTCTGATGCAGTTAGGGAGTTCATTCCACCAACTGGGCAGATTGAGCGTGAGCGTTCGCGAAAGTGATTTCTTCCCTCTTTGGGATGGAACCACGAGGTGACGTTCATTCACAGAACGCAAGTTTCTGGAGGGCACATAGATCTGCAGAAGTGAGAGCAGATAAGAGCAGATAAGAAGGAGCAAGGCCAGAGGTCACTTTGTAGGCAAACATTCACCCAGTTCACCCAAAAATGGTTGACTTTGTTGTTCTGGAGTGTCAGATTTACAATGGCCCTAATTTTTTATGTTAAATGAAATACTATTTTCAGGCCATGTTTACTGGCTGGCCACAGTCTTCCACTGCACCTTGGTTCAGCATTTATTTCAAAGGATCCCTACCCTGTACTAAAATGGCGGCTCTATTGACGCCTATCCTTTCAATAGACAACAACAGGGTAGACGACATCTAATGTAAATATCTATGATTGGCAACATTGGTGCTATTAGATGTGCCTTTTTGTATTTGCATGTGTTGTGATAATATGCATGCATGTGTGTTGTCAAACTGATGAAGATTTGTTTTCTTAACTTCCAATGTGTTCGATCTCTCTTAGCCACCAAACAGAATTAAGTATATAGGCTCTATTCTTAAATTCTCTATTCTCTATTCTTATTCTTAAAGCAGTAAATCATTTGCATTTAAAGAGACAGGCACAAAAACAGCATTTTTTTCCACACACACCCAAAATAGGTTCAAATTTGACCAGTTATAAAACATTATTTGTCTGAGTTAAAACCTCACAGACACTTTCAGAAGACACCAGAGATTTATTTTTGGTTGAAGGGGAAAAAAGTTTCCCATAAAAGTTTCAGTCTTCGCAAATTAATGATGAAAATTTGATGCGTCTAAGTAACTTTTGCAAATTAACTTTGATGTGACATCACGTTAACTATGCATCACTTTAACTAAGTTCAAATTATTTGTTAAATTCTCACTTTTAAAATGTAATATGTGAAATATTGGCATCAACCTTAACAATAAAATATATAAACAACACAAACTGTAGTGGTCAACAAGACATAGTCTACCACTATTATCAGCAATTATTGACAGAATTGGTATATTTTGACACAGTTGCCATTAATTGATCACAATTCCTCTGGTCTAATATCATTTTCTAACCACCTGCTTTTGTTTGTATGGTTTAG
Seq C2 exon
AAAGGTGCAGGCTATCATCTGGACCTTTTCTGGGTGGCTGTTCTGTTAGCGGTGTGCTCTTTCATGGGTCTGCCATGGTATGTGGCTGCAACAGTTATTTCCATCGCCCACATTGACAGCTTGAAGATGGAGACAGAGACCTCTGCCCCAGGAGAACAGCCCAAATTCTTAGGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013730:ENSDART00000124336:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]