GgaINT0077108 @ galGal3
Intron Retention
Gene
ENSGALG00000011604 | SLC4A4
Description
NA
Coordinates
chr4:51852511-51857031:+
Coord C1 exon
chr4:51852511-51852672
Coord A exon
chr4:51852673-51856852
Coord C2 exon
chr4:51856853-51857031
Length
4180 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TTGTCTGTCTCCCTTCACAGAAA
3' ss Score
12.09
Exon sequences
Seq C1 exon
CCAACCAGTCCCGAGAGGGGCTGGTTTATCCCACCTTTTGGAGGGAACCCATGGTGGGTGTACCTGGCAGCAGCCATCCCTGCACTGCTGGTGACTATCCTCATCTTCATGGACCAGCAAATCACAGCCGTCATTGTCAACAGGAAGGAACACAAGCTCAAG
Seq A exon
GTGGGTGTGCTTTGTGACTTGCATGTGTGCAAAGAGCTATCCCATGATCTTTCTGTGCTAGAGAGGCAGGAGGGCCTGTGGCAGTGTTCAGCACACAGTGTGGTTTAGCATGCAAGGAAAAAGAAGGTGGCCACAGTAGATCAACCGGGTAAGGATCTCACTCAAAGGACAGCCTAATTGAGGGAGCACAGTGCAGCATGAGCCATAACTGGAAGAAGTAGAAAGAGCTGGACAGCTGGGTTCTCCTGTATTGCTTATGCCCTTGAGTATCCCCTTATGTCACCACATTACGTGGGAAGAGGATGAAAGTTAACTGTAGGATAAATAGATTGGCGTGCATAAATCTACAGAGAGCATTTGTCGTAGGCAGCTCAGGCTTGTTACTGGGATAACCTGTGTGCTTGACAAGTCCTCTGCTCCAACCTGAGCAATGACCTGATTTTTCTTTGGATAGCACTGCATTATTGTCTCCAGGCCAAAACTTCTCTGATCTAATCAAAATAGGCAAAGCTTCCCTAGATCTGATAAGCCCCTGTTACTGTGTTTATTGTAAGGCAATTGCAGGTCAGTGTTCCCAGCAGTCAGCAGAACAAAGTCTCTGTCATGGCCTTCCCTGGGCAGGCACAGCACATCAGTGGGGCTCTCAGCCACTCCAAAGGAGGCACTGAGTGCCGGGGTGACCTTTGCTGGATATGGCAAAGAATGGCCCACGTTTGGCAGCTGTGTTGGTGTTACGGTACAGTAAAATACAAGAAATAGGCTGAAGAGATCTTAGGTATGCTAAAGGCATAACCACAATTGGATGTTATTTAAAGCTTCATATCCGCTGACATGTAGCAGCTTAGAATGTAGTAATGTTTTTAAAATAAATATTGCAAACCAGTGCTATGCAGGTTTTCACACCTGTAGGGTTTTTCCCTTCCCTGCATGGTCAGTTCTGTTGAAACACATTAAACTCCTGTAAAAGAAATCTCCCTTTTTGCTAACGGCACCCATTTCAAGTGGTCTACTCCATGACAGCAAAGACTCACTCTAAACGCAGGTAGTTCTGAGTGATAGTTTTAATAGCCACTTCAATGTTTATACTGACAGCTGCTGGAAATGCAGCTCTCCTGTGCATTGAGCTCCTACGTGAAAAAGAGGAGGCTGTTCCACTTCATAGGCATTAGGCAACCAGTGTGATTTAACACTGACTTAGAAGACCAGAAGGGCACGGGGAAGGTTTGCTGTGCAGAGTGAGGAATGGTGACTGGCCACTGTCTCATGGGGCTGGTTTGAAATAAACCTCAGAACATTGCTACTTGCCATCTGGAGCTGGACAAATAAAGTTAATGCTGCGCCCACATCTTCCTCATGGGAAGGCTAATCTTTACCCTGTCCTTGAAGCACACCATTAGGTGAAAGCACTTACGGAGGCAAGGTACAGCACAGGTGTCTGCCAGCCTGTCAGACAGGGCAGTTGGCACAGACTTGCTTTCTCCTGGTGTCTGGTTTCTTCATGTGATGGTGGCTCTATTCTTATTGACGTGGCCTCAGTTTTTGGTATGCTTTAACTGTCCTGATTTGGCCTTCTTGCTGCTACAAGATGTAAGCATATCCAGTCCAGTCCCAACAAAGCTGGAGAAGGCCACAAAAGACCAAAGCCCCCAGGTAATGTGTTCTGGGGCAGAGGCACCCAGCCTTCTTGCTACAAGCTTCTGACTAGCTGAACGTGGTTATGCTATCATCAGCACTGGGTGTACTTTTTTAGTAACAGAGTATAAACATTCCCACAAGGTACTGTTTAATAAAAAAAAAAAAATTGGTTTCCTGCTTCCTTTGTTACAGTTGTGAGAACACACTTTTGTTTAAATGGGGGTTCTCCAGTCCTCTCCTGCTGCTCTGCATCAAAATATACATCAATACACATCTACTGCAGGACCGAAGGAGGACTATTTTTTTTCCTGCTTCTGCCCTGTTAAAGTATTGGCAGGGTGGCACTGAGTAACCGTCTGGGTGCTGCTGGGCAGCCAAAGTAAGCAGTGAATGTATTAGGAAAACAATGACTATTATTCAAGAGGAGCTGGGTTGCTTTCCCTCTTAGGTCACCACGTAGGTCTGGCTCATTTGTTCTTTCCAATAAAATCAAATTGAACAAGTTTAAAAAAAGGTTAATCTTTAAAACATCAAACTGTAAAGAATTCTTTGGTGTTTTTCTAAAGATCCTATTCTTTGATGTCTTGTTTTGTTTTTTTGCTTCTTCTCTTGGCATTTGTGATTGGTGAATTTCCTGTGTTAGTCCTCCAAAGTATGTAAAAAGAACAGATTAATAATAGGAGTGTACTGGATATGGAGAGAGCTTTTAGGGGTGAATTCACCCAGTGTTTTGCTAGCAGGCACTGCTGTCTGCCTCTGACAGAAACTTCTGTTTACAACATCAGTTTCCACTGGAGCTTCTCTTCAGATCAGTCTGCAGAACAAAGGTTTCTAAAAAGAATCAAAGAATGAGGGCAGCTTTCTCTTTTTGATGCGTTATGAGCTGCTCTTGTCACTGTCCCCCAGAAAGCATAGTTGGGCTCTCAGGAAAGTACCTCCAGTACCCAGCGAAATCAGCAGTGCTCAGACTGACTGTGAAGTCCTGACTGAGCTTCTGCAGTTGCTTCCTATCCTAAATATAGGAGTTAAGATCTTGCTCTGAGATAGGAGCTGGTAAATGCTACCTTTCTGGCAGACACCATATATCCCTAAGATCACTTCCAGGTAGGCTTCATTAAGTCATTGCATCGAGTTGTTTTACAACAGCTGCCTCAAAAATAAGGCTTCTGTCTGGTTTTATGAAAGGTTGGTTTGTGTTTAAAACTCTGTACATATCCATGCTGTCACTCACACAAATGTGAGATGACTTGGCACACAAAAGTGCTGTTGTAGTTCCTGATGCCAAATGAAATAGCTCTTGAAATGGAAGGAGCTGTTGTACTTGGAAGAAAACATGGGACCTGGAGAAGGGATTGTGAGCAACTTTGTTCTCCATTGTACAGAAGAATTCTCTGACTTTAAGAAGCAGATTTCAAGTCTAACTGAAGATAGCAGACACTGTTTGTGTGCGATGTCTTTGCAAATCAGGATACGAGAGAAGAGAGAAACCAAATGAAGCGGGCAAAGCAAAAGCAGCTGAACAGGGATTTCATACCCAGTACCTGGGTGAGCACTGCTCCCCCTCCATCATCACTGGTTGTTCAGGCTCCACTCTGACAGTGATGTTTGTGTGGAATGCTAGACTCATATGAACACACAGTTGGTGAAAGTTCTGGCTTTCCACAATGTCAAAAGCAGTCCTGTGCCTGTAGCAGATCAGCAGGATAACAGCTCACAGTGTGCAAACTGCTCACTTGTTTAAAGACCACCCTTTCGCACTCTCGCCCTGTCCAAACTCTCTTGTTGCTGTATGTGTCTCATGCTCTGAAAATGGGCTGTTCTGGTTTTGCACACACTTGCGGAGTCAGCAGGGAGTTGCAATAGTGTTGGGTATTTGGTTTCTTGTCACTGTGTCACTTCATGTACGAAAAATCTGGTAAAGTTGAAATTGTAAAAATAGCATATATAGTGCAGTTCCATTTTTTGGTGGTTTTTTTTCAGAGGCAATACAGAGCTCCTTCCGGATACTGTAAACACTTTGTAATCAAGATATACATATATTTTGAGAGCTTGCTTATGCCGTTTACAAGATAAGATGTGTAGCTCGCCTAATGTTTTTCAGTGAACACAACCTCTCTACAGTCATATTTAGCTCATAGTCTGCTGTGTAAAGAGTACCGCTGTACTGAACTACCTGACTGGCCGCAGGGCTTGTCTTGCACCAACCCAACCTCCAAACACTGCACAGTGCTTGATCTTTTTTAAGTCTGCTACTTTCTTATACTTATTGCTTAACCCTCTTATATATGTTGTCTTCAGAACTTGCCAGAACAGTATCGTATACCTGCTTTCCCTGCTGAGGCAGTAGTTCATTATGTAGCAGTGTGACCTACTCTGCTAATTGCTCGTGAAAACTTCTGTCTCTTAGAACAGCCAAACAGTTCACCAAAGATACAGTCGAAGGAAATGCTGCTTGGTTGGTGTGCCTCTGCCCCATGCCAGAACCCTTTAGATGCCAGAAGCATTTAGAATAATTAAAGCTAAGGTTGTCTGTCTCCCTTCACAG
Seq C2 exon
AAAGGTGCTGGATATCACCTGGATTTGTTCTGGGTGGCCATTCTGATGATTGTCTGCTCCTTTATGGGTCTGCCCTGGTATGTTGCTGCTACTGTGATCTCCATTGCTCATATTGACAGCTTGAAGATGGAGACTGAGACTTCAGCCCCCGGAGAACAGCCCAAGTTTTTGGGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011604:ENSGALT00000018945:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(10.2=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]